Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,683,822 – 11,683,912 |
Length | 90 |
Max. P | 0.991243 |
Location | 11,683,822 – 11,683,912 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 94.07 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -22.60 |
Energy contribution | -23.43 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.11 |
Mean z-score | -2.18 |
Structure conservation index | 0.90 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11683822 90 - 22407834 ACUUCAUCAAUUCUAAUCAAGCCAGAGUCCUGGGCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACUGCCAGCCAGGGACUUGGGCCAUG ....................(((.(((((((.(((...((......)).........((((....))))..))).))))))).))).... ( -26.70) >DroSec_CAF1 145075 90 - 1 ACUUCAUCAAUUCUAAUCAAGCCAGAGUCCUGGGCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACUGCCAGCCAGGGACUUGGGUCAUG ....................(((.(((((((.(((...((......)).........((((....))))..))).))))))).))).... ( -24.70) >DroSim_CAF1 142902 90 - 1 ACUUCAUCAAUUCUAAUCAAGCCAGAGUCCUGGGCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACUGCCAGCCAGGGACUUGGGCCAUG ....................(((.(((((((.(((...((......)).........((((....))))..))).))))))).))).... ( -26.70) >DroEre_CAF1 168387 89 - 1 ACUUCAUCAAUUCUAAUCAAGCCGGAGUCCCG-GCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACAGCCAGCCAGGGACUUGGGCCAUG ....................(((.((((((((-((........((((...........)))).........))).))))))).))).... ( -27.33) >DroYak_CAF1 141218 90 - 1 ACUUCAUCAAUUCUAAUCAAGCCGGAGUCCUGGGCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACUGCCAGCCAGGGACUUGGGCCAUG ....................(((.(((((((.(((...((......)).........((((....))))..))).))))))).))).... ( -28.80) >DroAna_CAF1 150965 83 - 1 ACUUCAUCAAUUCUAAUCAAGCCGGAGGCCCGAGCAAAUCUCCGCUGAAAAUUAACCGCAGAAAACUGCCAGCCAGGGACUUG------- .................((((((((((((....))....))))((((..........((((....))))))))...)).))))------- ( -17.10) >consensus ACUUCAUCAAUUCUAAUCAAGCCAGAGUCCUGGGCAAAUCUCCGCUGAAAAUUAACCGCAGCAAACUGCCAGCCAGGGACUUGGGCCAUG ....................(((.(((((((.(((...((......)).........((((....))))..))).))))))).))).... (-22.60 = -23.43 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:30 2006