Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,679,781 – 11,679,886 |
Length | 105 |
Max. P | 0.920623 |
Location | 11,679,781 – 11,679,886 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 78.28 |
Mean single sequence MFE | -31.04 |
Consensus MFE | -23.80 |
Energy contribution | -25.12 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.13 |
Mean z-score | -1.80 |
Structure conservation index | 0.77 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.920623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11679781 105 + 22407834 ---UAGCAGGACUUUAAAUGCAGUUGCAGCUGCAGCUGCAGCUGGCAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAGUAGUGUCAACAGCAUCAC------ACA----CACACAC ---..((...........((((((((((((....))))))))).)))..........((((((..(((((.....)))))...))))))..)).....------...----....... ( -32.30) >DroSim_CAF1 138798 111 + 1 ---UAGCAGGACUUUAAAUGCAGUUGCAGCUGCAGCUGCAGCUGGCAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAGUAGUGUCAACAGCAUCACCCACACACA----CACACAC ---.....((........(((((((((....)))))))))(((((....).......((((((..(((((.....)))))...)))))))))).....)).......----....... ( -33.20) >DroEre_CAF1 164155 107 + 1 ---UGGCAGGACCUUAAAUGCAGUUGCAGCUGCAGCUGCAGCUGGCAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAGCAGUGUCAACAGCAUCACACACA--------CACACAC ---..((...........((((((((((((....))))))))).)))..........((((((..(((((.....)))))...))))))..))..........--------....... ( -31.40) >DroWil_CAF1 50676 118 + 1 AUGUGGCAGAGCUUCUGUUGCAGCUGCAAGUUGAACCAAAGCUGGCAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAGCAGUGUCAACAGCAUCAUCAACACACACACACACUCAC .((((...((....((((((..(((((((((((..((((((.((.........))))))))))))))(((.....))).)))))..)))))).....))..))))............. ( -32.20) >DroAna_CAF1 146203 103 + 1 ---UGGCAAGGAUUG----GGGGUUGCAACUUGAAAUGCAGCUGGGAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAACAGUGUCAACAACAUUGCACUGGCACA----CAC---- ---..((.((.....----..(((((((........))))))).....((((.....((((((..(((((.....)))))...)))))).....)))).)).))...----...---- ( -26.10) >consensus ___UGGCAGGACUUUAAAUGCAGUUGCAGCUGCAGCUGCAGCUGGCAAGCAAACACUUUGGCAAUUUGACUUUUGGUCAGCAGUGUCAACAGCAUCACACACACACA____CACACAC .....((.............((((((((((....)))))))))).............((((((..(((((.....)))))...))))))..))......................... (-23.80 = -25.12 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:28 2006