Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,679,571 – 11,679,680 |
Length | 109 |
Max. P | 0.730202 |
Location | 11,679,571 – 11,679,680 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 88.52 |
Mean single sequence MFE | -21.80 |
Consensus MFE | -15.73 |
Energy contribution | -16.33 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.72 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659052 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11679571 109 + 22407834 AUCCUGAUUUAGGACAAACAUACAACUGCCUGCCUUAAAUUCUCCUUCGCAGCACUCACAUCAAGAUGUGUCCCCUUGGCAUUUUGGCAUUGGCCAAAAUCAAACACAU .(((((...)))))............(((((((...............))).....(((((....))))).......))))(((((((....))))))).......... ( -19.86) >DroSec_CAF1 140711 109 + 1 ACCCUGAUUUAGGACAAACAUACAACUGCCUGCCUAAAAUUCUCCUUCGCAGCACUCACAUCAAGAUGUGUCCCCUUGGCAUUUUGGCAUUGGCCAAAAUCAAACACAU .......((((((.((..((......))..))))))))..........((......(((((....)))))........))((((((((....))))))))......... ( -20.84) >DroSim_CAF1 138588 109 + 1 ACCCUGAUUUAGGACAAACAUACAACUGCCUGCCUUAAAUUCUCCUUCGCAGCACUCACAUCAAGAUGUGUCCCCUUGGCAUUUUGGCAUUGGCCAAAAUCAAACACAU .....((((((((.((..((......))..)).)))))))).......((......(((((....)))))........))((((((((....))))))))......... ( -19.74) >DroEre_CAF1 163961 93 + 1 AGCCUGAUUUUGGACAAACAUUCAACUGCCUGCCUUAAA---------------CUCCCAUCGAGAUGUCUC-CCUGGGCAUUCUGGCAUUGGCCAAAAUCAAACACAU ....(((((((((.(((.((......))..((((.....---------------..((((..(((....)))-..))))......))))))).)))))))))....... ( -24.82) >DroYak_CAF1 136503 107 + 1 ACCCUGAUU-UGGCAAAACAUUCAAGUGCCUGCCUUAAAUUCUCC-UCGCAGCACUCACAUCAAGAUGUGUCCCCUUGGCAUUUUGGCAUUGGCCAAAAUCAAACACAU ....(((((-((((..........(((((.(((............-..))))))))....(((((((((.........))))))))).....))).))))))....... ( -23.74) >consensus ACCCUGAUUUAGGACAAACAUACAACUGCCUGCCUUAAAUUCUCCUUCGCAGCACUCACAUCAAGAUGUGUCCCCUUGGCAUUUUGGCAUUGGCCAAAAUCAAACACAU ....((((((.((.........(((.((((((((......................(((((....))))).......))))....))))))).)).))))))....... (-15.73 = -16.33 + 0.60)
Location | 11,679,571 – 11,679,680 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 88.52 |
Mean single sequence MFE | -32.22 |
Consensus MFE | -22.90 |
Energy contribution | -24.02 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.05 |
Mean z-score | -2.09 |
Structure conservation index | 0.71 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11679571 109 - 22407834 AUGUGUUUGAUUUUGGCCAAUGCCAAAAUGCCAAGGGGACACAUCUUGAUGUGAGUGCUGCGAAGGAGAAUUUAAGGCAGGCAGUUGUAUGUUUGUCCUAAAUCAGGAU .(((((((.((((((((....)))))))).(....))))))))(((((((.(((((.((.(....))).)))))(((((((((......)))))).)))..))))))). ( -32.90) >DroSec_CAF1 140711 109 - 1 AUGUGUUUGAUUUUGGCCAAUGCCAAAAUGCCAAGGGGACACAUCUUGAUGUGAGUGCUGCGAAGGAGAAUUUUAGGCAGGCAGUUGUAUGUUUGUCCUAAAUCAGGGU .(((((((.((((((((....)))))))).(....))))))))(((((((.......((.(....)))....(((((((((((......)))))).)))))))))))). ( -31.80) >DroSim_CAF1 138588 109 - 1 AUGUGUUUGAUUUUGGCCAAUGCCAAAAUGCCAAGGGGACACAUCUUGAUGUGAGUGCUGCGAAGGAGAAUUUAAGGCAGGCAGUUGUAUGUUUGUCCUAAAUCAGGGU .(((((((.((((((((....)))))))).(....))))))))(((((((.(((((.((.(....))).)))))(((((((((......)))))).)))..))))))). ( -32.00) >DroEre_CAF1 163961 93 - 1 AUGUGUUUGAUUUUGGCCAAUGCCAGAAUGCCCAGG-GAGACAUCUCGAUGGGAG---------------UUUAAGGCAGGCAGUUGAAUGUUUGUCCAAAAUCAGGCU ....((((((((((((.(((((((.((((.((((..-(((....)))..)))).)---------------)))..)))).(((......)))))).)))))))))))). ( -35.00) >DroYak_CAF1 136503 107 - 1 AUGUGUUUGAUUUUGGCCAAUGCCAAAAUGCCAAGGGGACACAUCUUGAUGUGAGUGCUGCGA-GGAGAAUUUAAGGCAGGCACUUGAAUGUUUUGCCA-AAUCAGGGU .(((((((.((((((((....)))))))).(....))))))))(((((((.....((..((((-((...(((((((.......))))))).))))))))-.))))))). ( -29.40) >consensus AUGUGUUUGAUUUUGGCCAAUGCCAAAAUGCCAAGGGGACACAUCUUGAUGUGAGUGCUGCGAAGGAGAAUUUAAGGCAGGCAGUUGUAUGUUUGUCCUAAAUCAGGGU .(((((((.((((((((....)))))))).(....))))))))(((((((..((((.((.(....))).))))..((((((((......))))))))....))))))). (-22.90 = -24.02 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:27 2006