| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,678,413 – 11,678,512 |
| Length | 99 |
| Max. P | 0.753308 |
| Location | 11,678,413 – 11,678,512 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 78.12 |
| Mean single sequence MFE | -30.00 |
| Consensus MFE | -17.02 |
| Energy contribution | -19.30 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.753308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11678413 99 - 22407834 ------C---------GCCCCAAAGCCUUUCCCACAGCUGCAUUUGGGAUUAUGACAAAAUGCAAUUU-GCAUUUGCAAAGACGUUUGUCGGGGAUCUUACAAGGCGGCUGGCAG ------.---------((......))........(((((((...(((((((.(((((((......(((-((....)))))....)))))))..)))))))....))))))).... ( -31.30) >DroPse_CAF1 131159 82 - 1 -----------------------UGCC---ACUGCAGCUGCGCUUGGGAUUAUGACAAAAUGCAAUUU-GCAUUUGCAAAGACGUUUGUCGGG-UC-UUACAAGACGACAG---- -----------------------(((.---...))).((((((((((((((.(((((((......(((-((....)))))....)))))))))-))-)..)))).)).)))---- ( -22.60) >DroSim_CAF1 137426 98 - 1 ------C---------GCC-CACCGCCUUUCCCACAGCUGCAUUUGGGAUUAUGACAAAAUGCAAUUU-GCAUUUGCAAAGACGUUUGUCGGGGAUCUUACAAGGCGGCUGGCAG ------.---------(((-..(((((((((((.....(((((((.(........).))))))).(((-((....)))))(((....))).))))......)))))))..))).. ( -35.90) >DroEre_CAF1 162823 113 - 1 CUCCCCCACGCUCCCAGCC-UCCUUCCUCUCCCGCAGCUGCAUUUGGGAUUAUGACAAAAUGCAAUUU-GCAUUUGCAAAGACGUUUGUCGGGGAUCUUACAAGGCGGCUUGCAA .........((....((((-.((((((((((((((....))....))))....((((((......(((-((....)))))....))))))))))).......))).)))).)).. ( -33.11) >DroYak_CAF1 135334 95 - 1 ------------------C-CCUUUACUUUCCCGCAGCUGCAUUUGGGAUUAUGACAAAAUGCAAUUU-GCAUUUGCAAAGACGUUUGUCGGGGAUCUUACAAGGCGGCUUGCAA ------------------.-.............((((((((...(((((((.(((((((......(((-((....)))))....)))))))..)))))))....))))).))).. ( -31.00) >DroPer_CAF1 133526 92 - 1 ------U---------GAC-AACUGCC---ACUGCAGCUGCGCUUGGGAUUAUGACAAAAUGCAAUUUGGCAUUUGCAAAGACGUUUGUCGGG-UCCUUACAAGACGACAGG--- ------.---------...-..((((.---...))))((((((((((((((.(((((((.(((((........)))))......)))))))))-)))...)))).)).))).--- ( -26.10) >consensus ______C_________GCC_CACUGCCUUUCCCGCAGCUGCAUUUGGGAUUAUGACAAAAUGCAAUUU_GCAUUUGCAAAGACGUUUGUCGGGGAUCUUACAAGGCGGCUGGCA_ ..................................(((((((.(((((((((.(((((((.(((((........)))))......)))))))..)))))..))))))))))).... (-17.02 = -19.30 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:23 2006