Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,669,998 – 11,670,090 |
Length | 92 |
Max. P | 0.914299 |
Location | 11,669,998 – 11,670,090 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.45 |
Mean single sequence MFE | -30.03 |
Consensus MFE | -23.28 |
Energy contribution | -24.70 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.12 |
Mean z-score | -2.10 |
Structure conservation index | 0.78 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.914299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11669998 92 + 22407834 -------------------CAUUUUCCCCAGCCCCAU--------UGCAUGUGCAUAUUUUGUGGAGCACUUCGUCGCAAAUUAAGUCGGCGCAGCGC-AGCAAAUGCUGCAUAUGCAUG -------------------..................--------((((((((((...(((((...((.((.((((((.......).))))).)).))-.)))))...)))))))))).. ( -29.20) >DroPse_CAF1 121799 112 + 1 CUCAACAUCUGCUUCUGCCUCUUGCCUCCUGCCUCGU--------GCCUCCUGCAUAUUUUGUAGAGCACUUCGUCGCAAAUUAUGUCGGCGCAGCGAAAGCAAAUGUUGCAUAUGCAUG ..((((((.(((((..((.....)).((((((...((--------((...(((((.....))))).))))...((((((.....)).)))))))).))))))).)))))).......... ( -31.30) >DroSim_CAF1 129083 92 + 1 -------------------CAUUUUCCCCAGCCCCAU--------UGCAUGUGCAUAUUUUGUGGAGCACUUCGUCGCAAAUUAUGUCGGCGCAGCGC-AGCAAAUGCUGCAUAUGCAUG -------------------..................--------((((((((((...(((((...((.((.(((((((.....)).))))).)).))-.)))))...)))))))))).. ( -30.40) >DroEre_CAF1 152665 92 + 1 -------------------CAUUUUCCCCAGACCCAU--------UGCAUGUGCAUAUUUUGCGGAGCACUUCGGCGCAAAUUAUGUCGGCGCUGCGC-AGCAAAUGCUGCAUAUGCAUG -------------------..................--------(((((((((((((((((((.(((...((((((.......)))))).))).)))-)..))))).)))))))))).. ( -31.20) >DroYak_CAF1 127011 92 + 1 -------------------CAUUUUCCCCAGCCCCAU--------UGCAUGUGCAUAUUUUGUGGAGCACUUCGUCGCAAAUUAUGUCGGCGCAGCGC-AGCAAACGCUGCAUAUGCAUG -------------------..................--------((((((((((...(((((...((.((.(((((((.....)).))))).)).))-.)))))...)))))))))).. ( -29.70) >DroAna_CAF1 136989 101 + 1 -------------------CGUUUGCCACGCCCACAUCUUUGCCCUGUUUGUGCAUAUUUUGUAGAGCACUUCGUUGCAAAUUAUGUCGGCGCAGCGAAAGCAAAUGCUGCAUAUGCAUG -------------------....(((...(((.((((.(((((..((...((((............))))..))..)))))..)))).)))((((((........))))))....))).. ( -28.40) >consensus ___________________CAUUUUCCCCAGCCCCAU________UGCAUGUGCAUAUUUUGUGGAGCACUUCGUCGCAAAUUAUGUCGGCGCAGCGC_AGCAAAUGCUGCAUAUGCAUG .............................................((((((((((...(((((...((.((.(((((((.....)).))))).)).))..)))))...)))))))))).. (-23.28 = -24.70 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:21 2006