Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,663,568 – 11,663,664 |
Length | 96 |
Max. P | 0.511058 |
Location | 11,663,568 – 11,663,664 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 85.88 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -23.05 |
Energy contribution | -23.19 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.15 |
Mean z-score | -1.72 |
Structure conservation index | 0.80 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11663568 96 + 22407834 AAAGGAAAAAUGCGAGGCUGAGGCCAUGGAGGCGCAUACGUAUUGUGAGGAAAUAUGUAAUUAAAUUUUUCUCCCGUAUGUCAUGUCU-UCGCCUCG ............((((((.((((((.....)))((((((((((.(.(((((((.............)))))))).)))))).))))))-).)))))) ( -29.82) >DroSec_CAF1 124888 96 + 1 AGAGGAAAAAUGCGAGGCUGAGGCCAUGGAGGCGCAUACGUAUUGUGAGGAAAUAUGUAAUUAAAUUUUUCUCCCGUAUGUCAUGUCU-UCGCCUCG ............((((((.((((((.....)))((((((((((.(.(((((((.............)))))))).)))))).))))))-).)))))) ( -29.82) >DroSim_CAF1 122701 96 + 1 AAAGGAAAAAUGCGAGGCUGAGGCCAUGGAGGCGCAUACGUAUUGUGAGGAAAUAUGUAAUUAAAUUUUUCUCCCGUAUGUCAUGUCU-UCGCCUCG ............((((((.((((((.....)))((((((((((.(.(((((((.............)))))))).)))))).))))))-).)))))) ( -29.82) >DroEre_CAF1 146374 96 + 1 GAUGGAAAAAUGCGAGGCUGAGGCCGUGGAGGCGCAUACGUAUUGUGAGGAAAUAUGUAAUUAAAUUUUUCUCCCGUAUGUCAUGUCU-UCGCCUCG ............((((((.((((((.....)))((((((((((.(.(((((((.............)))))))).)))))).))))))-).)))))) ( -30.52) >DroYak_CAF1 120680 96 + 1 GCAGGAAAAGUGCGAGGCUGGGGCCAUGGAGGCGCAUACGUAUUGUGAGGAAAUAUGUAAUUAAAUUUUUCUCCCGUAUGUCAUGUCU-UCGCCUCG (((.......)))(((((..(((((.....)))((((((((((.(.(((((((.............)))))))).)))))).))))))-..))))). ( -30.22) >DroPer_CAF1 116902 84 + 1 ------------GGUGGG-GGGGACAAUGGGGCGUAUACGUAUUCCGAGGAAAUGUGUAAUUAAAUUUUUCUUUCGCUUGUCAUGGCCGGUGCCCCG ------------......-(....)...(((((.(((((((.(((....))))))))))................(((.((....)).)))))))). ( -23.10) >consensus AAAGGAAAAAUGCGAGGCUGAGGCCAUGGAGGCGCAUACGUAUUGUGAGGAAAUAUGUAAUUAAAUUUUUCUCCCGUAUGUCAUGUCU_UCGCCUCG ...............(((....)))...(((((((((((((((.(.(((((((.............)))))))).)))))).))).....)))))). (-23.05 = -23.19 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:14 2006