Locus 4016

Sequence ID 2L_DroMel_CAF1
Location 11,663,223 – 11,663,318
Length 95
Max. P 0.918427
window6331

overview

Window 1

Location 11,663,223 – 11,663,318
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 98.32
Mean single sequence MFE -27.94
Consensus MFE -26.90
Energy contribution -27.10
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.96
SVM decision value 1.12
SVM RNA-class probability 0.918427
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11663223 95 + 22407834
UUAAUUCGACGUACCAUGAAACACACGUCAGGAACUCAUUUGGAUGGCAGAGCUCGAUGAGAUCCGUGUAAGCGUUAAAGCGCCGACAUGACUGC
.......(((((............))))).(((.((((((.((.........)).)))))).)))((((..((((....))))..))))...... ( -24.20)
>DroSec_CAF1 124542 95 + 1
UUAAUUCGACGUACCAUGAAACACACGUCAGGAACUCAUUUGGCCAGCAGAGCUCGAUGAGAUCCGUGUAAGCGUUAAAGCGCCGACAUGACUGC
.......(((((............))))).(((.((((((.((((....).))).)))))).)))((((..((((....))))..))))...... ( -28.10)
>DroSim_CAF1 122355 95 + 1
UUAAUUCGACGUACCAUGAAACACACGUCAGGAACUCAUUUGGCCAGCAGAGCUCGAUGAGAUCCGUGUAAGCGUUAAAGCGCCGACAUGACUGC
.......(((((............))))).(((.((((((.((((....).))).)))))).)))((((..((((....))))..))))...... ( -28.10)
>DroEre_CAF1 146025 95 + 1
UUAAUUCGACGUGCCAUGAAACACACGUCAGGAACUCAUUUGGCCAGCAGAGCUCGAUGAGAUCCGUGUAAGCGUUAAAGCGCCGACAUGACUGC
.......((((((..........)))))).(((.((((((.((((....).))).)))))).)))((((..((((....))))..))))...... ( -31.20)
>DroYak_CAF1 120326 95 + 1
UUAAUUCGACGUACCAUGAAACACACGUCAGGAACUCAUUUGGCCAGCAGAGCUCGAUGAGAUCCGUGUAAGCGUUAAAGCGCCGACAUGACUGC
.......(((((............))))).(((.((((((.((((....).))).)))))).)))((((..((((....))))..))))...... ( -28.10)
>consensus
UUAAUUCGACGUACCAUGAAACACACGUCAGGAACUCAUUUGGCCAGCAGAGCUCGAUGAGAUCCGUGUAAGCGUUAAAGCGCCGACAUGACUGC
.......(((((............))))).(((.((((((.(((.......))).)))))).)))((((..((((....))))..))))...... (-26.90 = -27.10 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:13 2006