Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,662,001 – 11,662,126 |
Length | 125 |
Max. P | 0.992623 |
Location | 11,662,001 – 11,662,103 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 73.61 |
Mean single sequence MFE | -35.84 |
Consensus MFE | -22.13 |
Energy contribution | -23.54 |
Covariance contribution | 1.41 |
Combinations/Pair | 1.23 |
Mean z-score | -2.27 |
Structure conservation index | 0.62 |
SVM decision value | 2.34 |
SVM RNA-class probability | 0.992623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11662001 102 - 22407834 AA---CUUCA-----GGCUGCGGUGUGUCAUUGCUGGACAAGCAAAGCAGAUUGGCACCCGGACAGCAGGUGGACUGAUGCUGAACUGAAUGCACCGCGGCAUUAGGCAA ..---((...-----.((((((((((((..(((((.....)))))..(((.(..(((.(.(..((.....))..).).)))..).))).))))))))))))...)).... ( -37.60) >DroSec_CAF1 123308 102 - 1 AA---CUUCA-----GGCUGCGGUGUGUCAUUGCUGGACAAGCAAAGCAGAUUGGCACCCGGACAGCAGGUGGACUGAUGCUGAACUGAAUGCACCGCGGCAUUAGUCAA .(---((...-----.(((((((.(((((((((((..........)))))..)))))))))..)))).))).(((((((((((...((....))...))))))))))).. ( -38.60) >DroSim_CAF1 121123 102 - 1 AA---CUUCA-----GGCUGCGGUGUGUCAUUGCUGGACAAGCAAAGCAGAUUGGCACCCGGACAGCAGGUGGACUGAUGCUGAACUGAAUGCACCGCGGCAUUAGGCAA ..---((...-----.((((((((((((..(((((.....)))))..(((.(..(((.(.(..((.....))..).).)))..).))).))))))))))))...)).... ( -37.60) >DroEre_CAF1 144830 87 - 1 CA---CUUCA-----GGCUGCGGUGUGUCAUUGCUGGACAAGCAAACCAGAUUGCCAGCCGGAU---------------GCUAAACUGAAUGCACCGCGGCAUUAGGCAA ..---((...-----.((((((((((((....(((((.(((.(......).))))))))(((..---------------......))).))))))))))))...)).... ( -31.20) >DroAna_CAF1 129158 95 - 1 AAUCAUUUUGGAACGGGCC-UUGUCUGUCAUUGUCGCAGUCCCAAACCGAAGUGACAGUUGGCCAACAACUGG-------CUG----GCAUGC---CUGGCAUUAGGCAA ..(((((((((...(((.(-(((.(.......).)).)).)))...)))))))))..((..((((.....)))-------)..----)).(((---(((....)))))). ( -34.20) >consensus AA___CUUCA_____GGCUGCGGUGUGUCAUUGCUGGACAAGCAAAGCAGAUUGGCACCCGGACAGCAGGUGGACUGAUGCUGAACUGAAUGCACCGCGGCAUUAGGCAA ................((((((((((((((...(((...........)))..)))).......(((((..........)))))........))))))))))......... (-22.13 = -23.54 + 1.41)
Location | 11,662,032 – 11,662,126 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 86.12 |
Mean single sequence MFE | -31.50 |
Consensus MFE | -23.54 |
Energy contribution | -24.34 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.75 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598116 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11662032 94 - 22407834 GCAGCAGGAGCGAGGACGAAGGAAACUUCAGGCUGCGGUGUGUCAUUGCUGGACAAGCAAAGCAGAUUGGCACCCGGACAGCAGGUGGACUGAU- ....(((..((......((((....))))..(((((((.(((((((((((..........)))))..)))))))))..))))..))...)))..- ( -32.90) >DroSec_CAF1 123339 94 - 1 GCAGCAACAGCGAGGACGAAGGAAACUUCAGGCUGCGGUGUGUCAUUGCUGGACAAGCAAAGCAGAUUGGCACCCGGACAGCAGGUGGACUGAU- .(((...((.(......((((....))))..(((((((.(((((((((((..........)))))..)))))))))..)))).).))..)))..- ( -33.30) >DroSim_CAF1 121154 94 - 1 GCAGCAGGAGCGAGGACGAAGGAAACUUCAGGCUGCGGUGUGUCAUUGCUGGACAAGCAAAGCAGAUUGGCACCCGGACAGCAGGUGGACUGAU- ....(((..((......((((....))))..(((((((.(((((((((((..........)))))..)))))))))..))))..))...)))..- ( -32.90) >DroEre_CAF1 144861 79 - 1 GCAGCAGGAGCCAGGACGAAGGACACUUCAGGCUGCGGUGUGUCAUUGCUGGACAAGCAAACCAGAUUGCCAGCCGGAU---------------- ..........((.....((((....)))).(((((((((.((...(((((.....)))))..)).)))).)))))))..---------------- ( -25.70) >DroYak_CAF1 119107 95 - 1 GCAGCAGGAGUAGGGACGAAGGAAACUUCAGGCUGCGGUGCGUCAUCGCUGGACAAGCAAACCAGAUUGGCAGCCGGAAAGCAGGUGGUCCAAUG (((((....((....))((((....))))..)))))(((..((((...((((.........))))..)))).)))(((..(....)..))).... ( -32.70) >consensus GCAGCAGGAGCGAGGACGAAGGAAACUUCAGGCUGCGGUGUGUCAUUGCUGGACAAGCAAAGCAGAUUGGCACCCGGACAGCAGGUGGACUGAU_ (((((....(......)((((....))))..)))))((.((((((...(((...........)))..)))))))).................... (-23.54 = -24.34 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:10 2006