Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,658,257 – 11,658,352 |
Length | 95 |
Max. P | 0.969991 |
Location | 11,658,257 – 11,658,352 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 98.74 |
Mean single sequence MFE | -21.20 |
Consensus MFE | -20.26 |
Energy contribution | -20.10 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.65 |
Structure conservation index | 0.96 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959323 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11658257 95 + 22407834 AAACCACAAAGCAAACACAAACACAAAUAGAGAUGAGAGGGUAUGAGGAGGCUUAAAUGGGGGUUCGUGGGUGCCGCAGUGGAAACAGUGGCAAA ...((((..........((.((.....((....)).....)).))..(((.(((.....))).))))))).((((((..((....)))))))).. ( -20.50) >DroSec_CAF1 119590 95 + 1 AAACCACAAAGCAAACACAAACACAAAUAGAGAUGAGAGGGUAUGAGGAGGCUUAAAUGGGGGUUCGUGGGUGCCGCAGUGGAAACAGUGGCAAA ...((((..........((.((.....((....)).....)).))..(((.(((.....))).))))))).((((((..((....)))))))).. ( -20.50) >DroSim_CAF1 117396 95 + 1 AAACCACAAAGCAAACACAAACACAAAUAGAGAUGAGAGGGUAUGAGGAGGCUUAAAUGGGGGUUCGUGGGUGCCGCAGUGGAAACAGUGGCAAA ...((((..........((.((.....((....)).....)).))..(((.(((.....))).))))))).((((((..((....)))))))).. ( -20.50) >DroEre_CAF1 141195 95 + 1 AAACCACAAAGCAAACACAAACACAAAUAGAGAUGAGAGGGUAUGAGGAGGCUUAAAUGGGGGUUCGUGGGUGCCGCAGUGGAAACAGUGGCAGA ...((((..........((.((.....((....)).....)).))..(((.(((.....))).))))))).((((((..((....)))))))).. ( -20.50) >DroYak_CAF1 115391 95 + 1 AAACCACAAAGCAAACACAAACACAAAUAGAGAUGAGAGGGUUUGAGGAGGCUUAAAUGGGGGUUCGUGGGUGCCGCAGUGGAAACAGUGGUAAA ..(((((...(((..(((.....(((((.....(....).)))))..(((.(((.....))).))))))..))).....((....)))))))... ( -24.00) >consensus AAACCACAAAGCAAACACAAACACAAAUAGAGAUGAGAGGGUAUGAGGAGGCUUAAAUGGGGGUUCGUGGGUGCCGCAGUGGAAACAGUGGCAAA ...((((..........((.((.....((....)).....)).))..(((.(((.....))).))))))).((((((..((....)))))))).. (-20.26 = -20.10 + -0.16)
Location | 11,658,257 – 11,658,352 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 98.74 |
Mean single sequence MFE | -16.26 |
Consensus MFE | -16.26 |
Energy contribution | -16.26 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 1.00 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11658257 95 - 22407834 UUUGCCACUGUUUCCACUGCGGCACCCACGAACCCCCAUUUAAGCCUCCUCAUACCCUCUCAUCUCUAUUUGUGUUUGUGUUUGCUUUGUGGUUU .............((((...((((..(((((((...((..((........................))..)).)))))))..))))..))))... ( -16.26) >DroSec_CAF1 119590 95 - 1 UUUGCCACUGUUUCCACUGCGGCACCCACGAACCCCCAUUUAAGCCUCCUCAUACCCUCUCAUCUCUAUUUGUGUUUGUGUUUGCUUUGUGGUUU .............((((...((((..(((((((...((..((........................))..)).)))))))..))))..))))... ( -16.26) >DroSim_CAF1 117396 95 - 1 UUUGCCACUGUUUCCACUGCGGCACCCACGAACCCCCAUUUAAGCCUCCUCAUACCCUCUCAUCUCUAUUUGUGUUUGUGUUUGCUUUGUGGUUU .............((((...((((..(((((((...((..((........................))..)).)))))))..))))..))))... ( -16.26) >DroEre_CAF1 141195 95 - 1 UCUGCCACUGUUUCCACUGCGGCACCCACGAACCCCCAUUUAAGCCUCCUCAUACCCUCUCAUCUCUAUUUGUGUUUGUGUUUGCUUUGUGGUUU .............((((...((((..(((((((...((..((........................))..)).)))))))..))))..))))... ( -16.26) >DroYak_CAF1 115391 95 - 1 UUUACCACUGUUUCCACUGCGGCACCCACGAACCCCCAUUUAAGCCUCCUCAAACCCUCUCAUCUCUAUUUGUGUUUGUGUUUGCUUUGUGGUUU .............((((...((((..(((((((...((..((........................))..)).)))))))..))))..))))... ( -16.26) >consensus UUUGCCACUGUUUCCACUGCGGCACCCACGAACCCCCAUUUAAGCCUCCUCAUACCCUCUCAUCUCUAUUUGUGUUUGUGUUUGCUUUGUGGUUU .............((((...((((..(((((((...((..((........................))..)).)))))))..))))..))))... (-16.26 = -16.26 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:07 2006