Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,652,871 – 11,652,976 |
Length | 105 |
Max. P | 0.552088 |
Location | 11,652,871 – 11,652,976 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.59 |
Mean single sequence MFE | -36.73 |
Consensus MFE | -21.83 |
Energy contribution | -21.50 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.40 |
Mean z-score | -2.17 |
Structure conservation index | 0.59 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11652871 105 - 22407834 UGGACAGCUUCGUUGUUGAAACACCACCCGCAUCAAUGCGAUCUUUUUCAUUGAGAACUUCGGCCUGCUUCUUGGCCACGGCCAUCUCUUCAUUGAUGGC-CUUGG ..((((((...))))))(((........((((....)))).((((.......))))..)))((((........))))..(((((((........))))))-).... ( -31.60) >DroSec_CAF1 106266 106 - 1 UGGACAGCUUCGUUGUUGAGACACCACCCGCAUCAAUGCGGUUUUUUUCACUGAGAGCUUCGGCCUGCUUCUUGGCCACGGCCAUCUCUUCAUUGAUGGCCCUUGG ..((((((...))))))((((......(((((....)))))....)))).(..((......((((........))))..(((((((........)))))))))..) ( -35.70) >DroSim_CAF1 110937 105 - 1 UGGACAGCUUCGUUGUUGAGACAGCACCCGCAUCAAUGCGGUUUUUUUCACUGAGAGCUUCGGCCUGCUUCUUGGCCACGGCCAUCUCUUCAUUGAUGGC-CUUGG ..((.(((((.(((((....)))))..(((((....))))).............)))))))((((........))))..(((((((........))))))-).... ( -38.40) >DroEre_CAF1 135831 105 - 1 UGGAGAGUUCCGUCCUGGAGACUUUACCCGCAUCAAUGCGGUCUUUUUCGUUGAGGGCUGCGGCCUGCUUCUUGGCUACGGCCAUCUCUUCAUUGAUGGC-CUUGG .((((((((((.....))).))))).)).........(((((((((......)))))))))((((........))))..(((((((........))))))-).... ( -38.40) >DroYak_CAF1 109947 105 - 1 GGGAGAGUUUCGUCUUUGAGACACCACCCGCAUCAAUGCGGUCUUUUUCAUUGAGUGCAGCGGCCUGCUUCUUGGCCACGGCCAUCUCUUCAUUGAUGGC-CUUGG (((.(.((((((....)))))).)..)))(((((((((..(....)..)))))).))).(.((((........)))).)(((((((........))))))-).... ( -40.20) >DroAna_CAF1 119785 105 - 1 UUGAAACGUUAACCUUCGAUUCCCCGCCUGCAUCGAUGCGGGCCUUUUCGUGGAUGGCAGCCGCCUGUUUCUUGGCCAGAGACAUUUCCUCGUUGAUGGC-CUUUG ..(((((.....((..(((......(((((((....)))))))....))).))..(((....))).)))))..(((((..(((........)))..))))-).... ( -36.10) >consensus UGGACAGCUUCGUCGUUGAGACACCACCCGCAUCAAUGCGGUCUUUUUCAUUGAGAGCUGCGGCCUGCUUCUUGGCCACGGCCAUCUCUUCAUUGAUGGC_CUUGG ........(((.((..(((((......(((((....)))))....)))))..)))))....((((........))))...((((((........))))))...... (-21.83 = -21.50 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:05 2006