Locus 4010

Sequence ID 2L_DroMel_CAF1
Location 11,648,042 – 11,648,145
Length 103
Max. P 0.905038
window6321

overview

Window 1

Location 11,648,042 – 11,648,145
Length 103
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 79.43
Mean single sequence MFE -32.68
Consensus MFE -20.57
Energy contribution -21.18
Covariance contribution 0.62
Combinations/Pair 1.35
Mean z-score -2.17
Structure conservation index 0.63
SVM decision value 1.04
SVM RNA-class probability 0.905038
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11648042 103 + 22407834
GUCAUUUUAUCAUUUAUCUU-UU--U---CGAA---CGAUACUCCGGGUACAGAUAGAUGGUGAUGUCGCUGAUAAAGCGACGUCUUUGGAAAAGCUGUAGAAGAUCGCAGU
........(((((((((((.-.(--(---((..---........))))...)))))))))))(((((((((.....))))))))).........(((((........))))) ( -30.10)
>DroVir_CAF1 9582 112 + 1
GUUAUCUUUUGGGCAGUGCGUGUCUGCAAUUUGCGAUCGUACUCCGGGUACAGCAUGAUCGGAAUGUUGCUGAUGAAGCGCUUACUCUGAAAAAGUUGCAGCAGAUCGCAAU
............((((.......))))...((((((((((((.....)))).(((...(((((.((.((((.....))))..)).)))))......)))....)))))))). ( -31.40)
>DroSec_CAF1 101450 103 + 1
GUGAUUUUAUCAUUAAUCUU-UU--U---CGAA---CGAUACUCCGGGUAUAGAUAGAUGGUGAUAUCGCUAAUAAAGCGACGUCGUUGGAAAAGCUGCAGAAGAUCGCAGU
((((((((.........(((-((--(---(.((---((((.(.(((..((....))..))).)...(((((.....))))).)))))))))))))......))))))))... ( -26.26)
>DroSim_CAF1 106116 103 + 1
GUGAUUUUAUCAUUAAUCUU-CU--U---CGAA---CGAUACUCCGGGUACAGAUAGAUGGUGAUGUCGCUGAUAAAGCGACGUCGUUGGAAAAGCUGUAGAAGAUCGCAGU
((((((((............-..--.---....---((......))..(((((.....(..((((((((((.....))))))))))..)......))))).))))))))... ( -30.90)
>DroEre_CAF1 131175 103 + 1
GUGAUUUUGUCGUUAAUCUU-UU--U---CGAC---CGGUACUCCGGAUACAGAUAGAUGGUGAUGUCGCUUAUAAAGCGGCGUCGCUGGAAAAGCUGCAGCAGAUCGCAGU
(((((((.((.((....(((-((--(---(..(---(((....))))............((((((((((((.....)))))))))))))))))))..)).)))))))))... ( -39.60)
>DroYak_CAF1 105030 103 + 1
GUGAUUUUAUCAUUGAUCUU-UU--U---CGAC---CGGUACUGCGGAUACAGAUAGAUGGUGAUGUCGCUGAUGAAGCGACGUCGCUGGAAAAGCUGUAGAAGAUCGCAGU
((((((((....((((....-..--)---)))(---((......))).(((((.....(((((((((((((.....)))))))))))))......))))).))))))))... ( -37.80)
>consensus
GUGAUUUUAUCAUUAAUCUU_UU__U___CGAA___CGAUACUCCGGGUACAGAUAGAUGGUGAUGUCGCUGAUAAAGCGACGUCGCUGGAAAAGCUGCAGAAGAUCGCAGU
((((((((............................((......))....(((.....(((((((((((((.....)))))))))))))......)))...))))))))... (-20.57 = -21.18 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:04 2006