| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,643,986 – 11,644,087 |
| Length | 101 |
| Max. P | 0.500000 |
| Location | 11,643,986 – 11,644,087 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 91.53 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -15.62 |
| Energy contribution | -16.88 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11643986 101 - 22407834 GGCACAGUGUAACCAACUAGAAUCCACUAGCACGCACACAUUGGCUUCAUCAAAAUGAAAUUUGUGAGCAAACACAUAAAGUGAAUCAAGUAAGCCA----GCCA (((...((((......((((......)))).....))))..(((((((............((((....))))(((.....)))......).))))))----))). ( -22.30) >DroSec_CAF1 97374 100 - 1 -----AGUGUAACCCACUAGAACCCACUAGCACGCACACAUUGGCUUCAUCAAAAUGAAAUUUGUGAGCAAACACAUAAAGUGAAUCAAGUAAGCCAGCCAGCCA -----.((((......((((......)))).....)))).((((((((............((((....))))(((.....)))......).)))))))....... ( -17.00) >DroSim_CAF1 102024 105 - 1 GGCACAGUGUAACCCACUAGAACCCACUAGCACGCACACAUUGGCUUCAUCAAAAUGAAAUUUGUGAGCAAACACAUAAAGUGAAUCAAGUAAGCCAGCCAGCCA (((...((((......((((......)))).....)))).((((((((............((((....))))(((.....)))......).)))))))...))). ( -22.70) >DroYak_CAF1 101034 101 - 1 CGCACAGUGUAAGCCACUAGAGGCCACUACCACGCACACAUUGGCUUCAUCAAAAUGAAAUUUGUGAGCAAACACAUAAAGUGAAUCACGUAAGCCA----GCCA .((..((((...(((......))))))).............(((((((((....)))))....((((.....(((.....)))..))))....))))----)).. ( -21.20) >consensus GGCACAGUGUAACCCACUAGAACCCACUAGCACGCACACAUUGGCUUCAUCAAAAUGAAAUUUGUGAGCAAACACAUAAAGUGAAUCAAGUAAGCCA____GCCA (((...((((......((((......)))).....))))..(((((((............((((....))))(((.....)))......).))))))....))). (-15.62 = -16.88 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:01 2006