Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,640,616 – 11,640,707 |
Length | 91 |
Max. P | 0.551903 |
Location | 11,640,616 – 11,640,707 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 86.81 |
Mean single sequence MFE | -32.77 |
Consensus MFE | -21.70 |
Energy contribution | -22.77 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.66 |
Structure conservation index | 0.66 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11640616 91 - 22407834 GCUCCUGGCUUGUUGCUAGUUGUUGGUCUCAUGGCUGGAUGGCUUUGGUUUCGAGAAAUCAACGCGCACA--------CUCAUG--UGUUUGGGCCGUUCU ((..(((((.....)))))..)).((((....))))(((((((((((((((....)))))))((.(((((--------....))--))).)))))))))). ( -29.30) >DroSec_CAF1 93933 91 - 1 GCUCCUGGCUUGUUGCUAGUUGUUGGUCUUAUGGCUGGAUGGCUUUGGUUUCGAGAAAUCAACGCACACA--------CCCAUG--UGUGUGGGCCGUUCU ((..(((((.....)))))..)).((((....))))(((((((((((((((....)))))))((((((((--------....))--)))))))))))))). ( -35.30) >DroSim_CAF1 97854 91 - 1 GCUCGUGGCUUGUUGUUAGGUGGUGGUGUCAUGGCUGGAUGGCUUUGGUUUCGAGAAAUCAACGCACACA--------CCCAUG--UGUGUGGACCGUUCU ((.(((((((..(..(...)..)..).)))))))).((((((..(((((((....)))))))((((((((--------....))--))))))..)))))). ( -30.90) >DroYak_CAF1 97510 101 - 1 GCUCCUGGCUUGUUGCUAGUUGUUGGUCUCAUGGCUGGAUGGCAUUGCUUUCGAGAAACCAACGCGCACACUCGCACACCCAUGUGUGUGUGGGCGGUCCU .(((..(((....(((((....(..(((....)))..).)))))..)))...))).......(((.(((((.((((......)))).))))).)))..... ( -35.60) >consensus GCUCCUGGCUUGUUGCUAGUUGUUGGUCUCAUGGCUGGAUGGCUUUGGUUUCGAGAAAUCAACGCACACA________CCCAUG__UGUGUGGGCCGUUCU ....(((((.....))))).....((((....))))(((((((.(((((((....)))))))..(((((((..............))))))).))))))). (-21.70 = -22.77 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:58 2006