| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,639,591 – 11,639,684 |
| Length | 93 |
| Max. P | 0.982017 |
| Location | 11,639,591 – 11,639,684 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 96.99 |
| Mean single sequence MFE | -12.47 |
| Consensus MFE | -12.26 |
| Energy contribution | -12.26 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.938124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11639591 93 + 22407834 UGUCAAGGAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAUCUUUGCCACCAUUCGCUCUCGACCAUCCGAACACCUCCUUCCCU .(((..(((((((....))(((((....)))))..............................))))).)))..................... ( -12.30) >DroSec_CAF1 92977 93 + 1 UGUCAAGGAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAUCUUUGCCACCAUUCGCUCUCGACCAUCCGAACACCUCCUUCCUU .(((..(((((((....))(((((....)))))..............................))))).)))..................... ( -12.30) >DroSim_CAF1 96819 93 + 1 UGUCAAGGAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAUCUUUGCCACCAUUCGCUCUCGACCAUCCGAACACCUCCUUCCCU .(((..(((((((....))(((((....)))))..............................))))).)))..................... ( -12.30) >DroEre_CAF1 123058 93 + 1 UGUCAAGGAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAUCUUUGCCACCAUUCGCUCUCGACCAUCCGCACACCUCCCUCCCC .(((..(((((((....))(((((....)))))..............................))))).)))..................... ( -12.30) >DroYak_CAF1 96451 93 + 1 UGUCAAGGAGCGCUCAGGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAUCUUUGCCACCAUUUGCUCUCGACCAUCCGAACACCUCCUACCCU .....(((((......((((.........((((.......))))........))))...........(((......)))....)))))..... ( -13.13) >consensus UGUCAAGGAGCGCUCAAGCAUUCAUUUAUGAAUUUUUAUUAUUUUUUAUCUUUGCCACCAUUCGCUCUCGACCAUCCGAACACCUCCUUCCCU .(((..(((((((....))(((((....)))))..............................))))).)))..................... (-12.26 = -12.26 + -0.00)
| Location | 11,639,591 – 11,639,684 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 96.99 |
| Mean single sequence MFE | -19.72 |
| Consensus MFE | -17.94 |
| Energy contribution | -18.02 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.982017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11639591 93 - 22407834 AGGGAAGGAGGUGUUCGGAUGGUCGAGAGCGAAUGGUGGCAAAGAUAAAAAAUAAUAAAAAUUCAUAAAUGAAUGCUUGAGCGCUCCUUGACA .(..((((((.(((((((...(((....((........))...)))..............(((((....)))))..)))))))))))))..). ( -20.40) >DroSec_CAF1 92977 93 - 1 AAGGAAGGAGGUGUUCGGAUGGUCGAGAGCGAAUGGUGGCAAAGAUAAAAAAUAAUAAAAAUUCAUAAAUGAAUGCUUGAGCGCUCCUUGACA ....((((((.(((((((...(((....((........))...)))..............(((((....)))))..))))))))))))).... ( -18.60) >DroSim_CAF1 96819 93 - 1 AGGGAAGGAGGUGUUCGGAUGGUCGAGAGCGAAUGGUGGCAAAGAUAAAAAAUAAUAAAAAUUCAUAAAUGAAUGCUUGAGCGCUCCUUGACA .(..((((((.(((((((...(((....((........))...)))..............(((((....)))))..)))))))))))))..). ( -20.40) >DroEre_CAF1 123058 93 - 1 GGGGAGGGAGGUGUGCGGAUGGUCGAGAGCGAAUGGUGGCAAAGAUAAAAAAUAAUAAAAAUUCAUAAAUGAAUGCUUGAGCGCUCCUUGACA .(..((((((((.(((.(....(((....)))....).)))..............(((..(((((....)))))..))).)).))))))..). ( -18.70) >DroYak_CAF1 96451 93 - 1 AGGGUAGGAGGUGUUCGGAUGGUCGAGAGCAAAUGGUGGCAAAGAUAAAAAAUAAUAAAAAUUCAUAAAUGAAUGCCUGAGCGCUCCUUGACA .(...(((((.(((((((...(((....((........))...)))..............(((((....)))))..))))))))))))...). ( -20.50) >consensus AGGGAAGGAGGUGUUCGGAUGGUCGAGAGCGAAUGGUGGCAAAGAUAAAAAAUAAUAAAAAUUCAUAAAUGAAUGCUUGAGCGCUCCUUGACA ....((((((.(((((((...(((....((........))...)))..............(((((....)))))..))))))))))))).... (-17.94 = -18.02 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:57 2006