Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,638,046 – 11,638,146 |
Length | 100 |
Max. P | 0.722058 |
Location | 11,638,046 – 11,638,146 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.48 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -14.09 |
Energy contribution | -15.53 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.10 |
Mean z-score | -1.82 |
Structure conservation index | 0.59 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11638046 100 - 22407834 GCAAG--------------UAAAUCUGCAAGUCUAAAACCGG-GGC-AAAAAAUA----CAAGCAAUGCGAAAUUUUUGCAUUUUGCAUAUGCAGAAACACAGACGCUUUGGACUUGAGU .((((--------------(...((((((.((((.......)-)))-........----...(((((((((.....))))))..)))...))))))....((((...)))).)))))... ( -23.20) >DroPse_CAF1 85994 120 - 1 GCCAGAUCUAUAUGCCCUGCCCGGCUGCUGGUCUAAAACCGAAAGCAAAAAAAUACUUCCAGCUAAAGCGAAUAUUUUGCAUUUUGCAUAUGCAGAAACACAGACGCUUUGGACUUGACC ...(((((.....(((......)))....))))).....(....)............((.((((((((((....((((((((.......)))))))).......)))))))).)).)).. ( -26.50) >DroSec_CAF1 91408 100 - 1 GCAAG--------------UAAAUCUGCAAGUCUGAAAC-GG-GACAAAAAAAUA----CAAGCAAUGCGAAAUUUUUGCAUUUUGCAUAUGCAGAAACACAGACGCUUUGGACUUGAGU .((((--------------(...((((((.((((.....-.)-))).........----...(((((((((.....))))))..)))...))))))....((((...)))).)))))... ( -24.00) >DroEre_CAF1 121537 100 - 1 GCAAG--------------UAAAUCUGCAAGUCUAAAUCCGG-GGC-AAAAAGUA----CAAGCAAUGCGAAAUUUUUGCAUUUUGCAUAUGCAGAAACACAGACGCUUUGGACUUGAGU .....--------------.....((.((((((((((..((.-.((-(((((...----...((...))....))))))).((((((....)))))).......)).)))))))))))). ( -24.50) >DroYak_CAF1 94874 100 - 1 GCAAG--------------UAAAUCUGCAAGUCUAAAACCGG-AGC-AAAAAAUA----CAAGCAAUGCGAAAUUUUUGCAUUUUGCAUAUGCAGAAACACAGACGCUUUGGACUUGAGU .....--------------.....((.((((((((((..((.-.((-(((((...----...((...))....))))))).((((((....)))))).......)).)))))))))))). ( -23.30) >DroAna_CAF1 105070 83 - 1 GGUAG--------------CAAAUCUGCA-------------------AAAAGUA----CAACCAAAGCGAAUAUUUUGCAUUUUCCAUAUGCAGAAACACAGACGCUUUGGACUUGAGU ....(--------------((....))).-------------------.......----...((((((((....((((((((.......)))))))).......))))))))........ ( -20.60) >consensus GCAAG______________UAAAUCUGCAAGUCUAAAACCGG_GGC_AAAAAAUA____CAAGCAAUGCGAAAUUUUUGCAUUUUGCAUAUGCAGAAACACAGACGCUUUGGACUUGAGU ...........................((((((((((..............................((((.....)))).((((((....))))))..........))))))))))... (-14.09 = -15.53 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:54 2006