Locus 400

Sequence ID 2L_DroMel_CAF1
Location 1,218,180 – 1,218,291
Length 111
Max. P 0.659395
window633

overview

Window 3

Location 1,218,180 – 1,218,291
Length 111
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 84.53
Mean single sequence MFE -23.70
Consensus MFE -15.36
Energy contribution -16.18
Covariance contribution 0.81
Combinations/Pair 1.08
Mean z-score -1.85
Structure conservation index 0.65
SVM decision value 0.26
SVM RNA-class probability 0.659395
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1218180 111 + 22407834
AAUGGAACCAAUGCAGAGUUGAUGAUUUCACAAAAUUUGAUCAACUAACUGGUUCGUUGGCUCAGAUAAUAAUUGUAAACAAA-AAUGUGUGGUU-ACAAGUUGCCAUACAAU
....((.(((((((((((((((((((((....)))))..)))))))..)))...)))))).))....................-..((((((((.-.......)))))))).. ( -26.00)
>DroSim_CAF1 13765 108 + 1
AAUGGAACCAAUGCAAAGUUGAUGAAGUCACGAAAUUUGAUCAACUAACUGGUUCGCUGGCUCAGAUAAUAAUUGUAAACAAA-AAUGUGUGGUU-ACAAG---CCAUACGUC
....((((((.(....(((((((.((((......)))).))))))).).))))))............................-.(((((((((.-....)---)))))))). ( -26.40)
>DroEre_CAF1 13523 107 + 1
AAUGAAACCAAUGCAAACUUGAUGAAGUCACUAAAUUUGAUCAACUAGCUGGUUCGUUAGCUCAGAUAAUAGUUGAAAACAAA-AAUGUAUGGUU-ACAUG--ACAAUAUG--
.(((.(((((.((((.((((....)))).......((((.(((((((.(((((......)).)))....)))))))...))))-..)))))))))-.))).--........-- ( -21.90)
>DroYak_CAF1 14646 111 + 1
AAUGAAACCAAUGCAUAGUUGAUGAAGUCACUGAAUUUGAUCAACUAACUGGUUCGUUAGCUCAGAUAAUAAUUGAAAACAAAAAAUGCACGGCUCACGUU--UCCAUACGUC
...((..((..((((((((((((.((((......)))).)))))))).(((((......)).))).....................)))).)).))((((.--.....)))). ( -20.50)
>consensus
AAUGAAACCAAUGCAAAGUUGAUGAAGUCACUAAAUUUGAUCAACUAACUGGUUCGUUAGCUCAGAUAAUAAUUGAAAACAAA_AAUGUAUGGUU_ACAAG___CCAUACGUC
.....(((((.((((.(((((((.((((......)))).)))))))..(((((......)).))).....................))))))))).................. (-15.36 = -16.18 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:00 2006