Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 177,840 – 177,937 |
Length | 97 |
Max. P | 0.786917 |
Location | 177,840 – 177,937 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 96.72 |
Mean single sequence MFE | -26.56 |
Consensus MFE | -23.66 |
Energy contribution | -24.66 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.89 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 177840 97 + 22407834 CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUC-UGUGGAUGUGUAUUUUCAUCUCCCUGCAUGUAAUUGCAUUGC ........((((((((....((((..((((((((..(((((........))))).-)))))))).))))..)))))))).((((......)))).... ( -28.80) >DroSec_CAF1 24380 97 + 1 CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUC-UGUGGAUGUGUUUUUGCAUCUCCCUGCAUGUAAUUGCAUUGC ........(((((((.........(.((((((((..(((((........))))).-)))))))).)......))))))).((((......)))).... ( -25.16) >DroSim_CAF1 24682 97 + 1 CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUC-UGUGGAUGUGUUUUUGCAUCUCCCUGCAUGUAAUUGCAUUGC ........(((((((.........(.((((((((..(((((........))))).-)))))))).)......))))))).((((......)))).... ( -25.16) >DroEre_CAF1 28317 98 + 1 CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUCCAGUGGAUGUGUAUUUGCAUCUCCGUGCAUGUAAUUGCAUUGC ........(((((((.....((((..(((((((...(((((........)))))...))))))).))))...)))))))(((((......)))))... ( -28.10) >DroYak_CAF1 25851 98 + 1 CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUCCAGUGGAUGUGUAUUUGCAUCUCCGUGAAUGUAAUUGCAUUGC ........(((((((.....((((..(((((((...(((((........)))))...))))))).))))...)))))))...(((((....))))).. ( -25.60) >consensus CCCCCAAAGGAGGUGAUUAUGUAUCCCAUUCGCAAUGUGCGUUUGUAUCCGUAUC_UGUGGAUGUGUAUUUGCAUCUCCCUGCAUGUAAUUGCAUUGC ........(((((((.....((((..((((((((..(((((........)))))..)))))))).))))...))))))).((((......)))).... (-23.66 = -24.66 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:57 2006