Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,632,304 – 11,632,423 |
Length | 119 |
Max. P | 0.999084 |
Location | 11,632,304 – 11,632,423 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.99 |
Mean single sequence MFE | -31.92 |
Consensus MFE | -30.50 |
Energy contribution | -30.67 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.96 |
SVM decision value | 3.36 |
SVM RNA-class probability | 0.999084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11632304 119 + 22407834 ACCCA-GCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAAGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU .....-(((....))).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. ( -31.60) >DroPse_CAF1 79537 120 + 1 UCGCAUUCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAGGCUUAAACCAUACGCAAUGCCUCACUGUGGCGUUGAAAGUUUUCGACGU ..(((((.((...(((((.(((((...))))).).))))((((((.((((((((........)))))))).)))))).......))))))).........((((((((....)))))))) ( -32.70) >DroSim_CAF1 89399 119 + 1 ACCCA-GCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAAGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU .....-(((....))).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. ( -31.60) >DroEre_CAF1 115878 119 + 1 ACCCA-GCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAAGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU .....-(((....))).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. ( -31.60) >DroYak_CAF1 89051 119 + 1 ACCCA-GCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAAGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU .....-(((....))).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. ( -31.60) >DroAna_CAF1 99348 119 + 1 ACCCA-UCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAGGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU .....-..((....)).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. ( -32.40) >consensus ACCCA_GCGCAUUCGCACAAAGUUCAAGAUUUAGAUGCGUUAAGCGUUAUUUAUGGCCGCAAAUAAAUAAAGCUUAAACCAUACGCAAUGCCUCAUUGUGGCGUUGAAAGUUUUCGACGU ........((....)).....(((.(((((((.(((((.((((((.((((((((........)))))))).))))))......(((((((...))))))))))))..))))))).))).. (-30.50 = -30.67 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:50 2006