Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,631,547 – 11,631,660 |
Length | 113 |
Max. P | 0.591768 |
Location | 11,631,547 – 11,631,660 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 94.96 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -26.14 |
Energy contribution | -26.14 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.07 |
Structure conservation index | 0.95 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11631547 113 - 22407834 UUCAGGGCUGUCAUGUUGUUCCACCAACUGAUGGGUUACAGCUGCCUGCUAAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUUCGGCCCAAUACACCCACACAGCAGCACCA ....(((((((((.((((......)))))))(((((.(((((.....((..........)).....)))))..)))))......))))))....................... ( -28.50) >DroSec_CAF1 84850 113 - 1 UUCAGGGCUGUCAUGUUGUUCCACCAACUGAUGGGUUACAGCUGCCUGCUAAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUUCCGCCCAUUCCACCCACACAGCUACACCA ....((((.((((.((((......))))))))((((.(((((.....((..........)).....)))))..)))).........))))....................... ( -26.60) >DroSim_CAF1 88671 113 - 1 UUCAGGGCUGUCAUGUUGUUCCACCAACUGAUGGGUUACAGCUGCCUGCUAAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUUCCGCCCAUUCCACCCACACAGCAACACCA ....((((.((((.((((......))))))))((((.(((((.....((..........)).....)))))..)))).........))))....................... ( -26.60) >DroEre_CAF1 115135 113 - 1 UUCGGGGCUGUCAUGUUGUUCUACCAACUGAUGGGUUACAGCUGCCUGCUGAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUCCCGCCCCUUCCACCCACACAGCAACACCA ...(((((.((((.((((......))))))))((((.(((((.....((.((.((....)).)))))))))..)))).........)))))...................... ( -29.90) >DroYak_CAF1 88263 112 - 1 UUCAGGGCUGUCAUGUUGUUCUGCCAACUGAUGGGUUACAGCUGCCUGCUAAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUC-CGCCCCUUUCACCCACACAGCAACACCA ....((((.((((.((((......))))))))((((.(((((.....((..........)).....)))))..)))).......-.))))....................... ( -25.70) >consensus UUCAGGGCUGUCAUGUUGUUCCACCAACUGAUGGGUUACAGCUGCCUGCUAAAACUUGUGUCUCGUGCUGUCCGCCCACUUUUUCCGCCCAUUCCACCCACACAGCAACACCA ....((((.((((.((((......))))))))((((.(((((.....((..........)).....)))))..)))).........))))....................... (-26.14 = -26.14 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:49 2006