Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,628,320 – 11,628,410 |
Length | 90 |
Max. P | 0.587406 |
Location | 11,628,320 – 11,628,410 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 77.18 |
Mean single sequence MFE | -17.67 |
Consensus MFE | -11.21 |
Energy contribution | -11.43 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.08 |
Mean z-score | -1.30 |
Structure conservation index | 0.63 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11628320 90 - 22407834 UAGCAAUUUCACAACUUACUGUGGCCCACCGUACAUG-AGACCUCAACAACGCGGUCCUUU-CUCGUACUUGCCACAUUGUAAGUAGCCGCA .............((((((((((((.....((((..(-(((((.(......).))))...)-)..))))..))))))..))))))....... ( -22.90) >DroSec_CAF1 81670 90 - 1 UGGCAAUUUCACAACUUACUCUGCCCCACCGUACAUG-AGACCUCAACAACGCGGUCCUUU-CUCGUACUUGCCACAUUGUAAGUAGCCGCA .(((.......................(((((...((-(....))).....))))).....-....(((((((......))))))))))... ( -17.30) >DroSim_CAF1 85448 90 - 1 UGGCAAUUUCACAACUUACUCUGCCCCACCGUACAUG-AGACCUCAACAACGCGGUCCUUU-CUCGUACUUGCCACAUUGUAAGUAGCCGCA .(((.......................(((((...((-(....))).....))))).....-....(((((((......))))))))))... ( -17.30) >DroEre_CAF1 111975 84 - 1 ------UCUAAAAACUUACUUUGCCCCACAGUGCUCG-AAACCUCAACAUCGCGGUCCUCU-CUCGAACUUGCCACAUUGUAAGUAGCCGCU ------..........((((.((...)).))))....-.............(((((..((.-...))((((((......)))))).))))). ( -11.80) >DroYak_CAF1 85082 90 - 1 UAAUAACUUAACAACUUAAUUUGCCCCACAGUGCCUG-AAACCUCAACCACGCGGUCCUAU-CUCGUACUUGCCACAUUGUAAGUAGCCGCA ..............................(((..((-(....)))..)))(((((.....-....(((((((......)))))))))))). ( -17.10) >DroAna_CAF1 95114 73 - 1 -------------------UUGAAGCCACGGUGCCUGGCAACCUCAGGCUCGUAGUCCUUUGCUCGCACUUGCCACUUUGUAAGUAGCCACA -------------------.....((.((((.((((((.....)))))))))).)).........((((((((......)))))).)).... ( -19.60) >consensus U_GCAAUUUCACAACUUACUUUGCCCCACCGUACAUG_AAACCUCAACAACGCGGUCCUUU_CUCGUACUUGCCACAUUGUAAGUAGCCGCA ...................................................(((((..........(((((((......)))))))))))). (-11.21 = -11.43 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:45 2006