Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,627,927 – 11,628,022 |
Length | 95 |
Max. P | 0.899516 |
Location | 11,627,927 – 11,628,022 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.27 |
Mean single sequence MFE | -35.43 |
Consensus MFE | -20.00 |
Energy contribution | -21.45 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.14 |
Mean z-score | -2.97 |
Structure conservation index | 0.56 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11627927 95 + 22407834 GCAAAAGCCCUAAGCUAGCACACCCGA-AAGGCGUCUAAAGCCAGCAAAAAUAUGGCCACAGAAGUGGUCGGGG------UUGCGAA-GAACU-------------UGGGGCUU-CC ....((((((((((((.(((.((((..-..(((.......)))..........(((((((....))))))))))------))))..)-)..))-------------))))))))-.. ( -39.40) >DroSec_CAF1 81279 95 + 1 GCAAAAGCCCUAAGCCAGCACACCCGA-AAGGCGUCUAAAGCCAGCAAAAAUAUGGCCACAGAAGUGGUCGGGG------UUGCGAA-GAACU-------------UGGGGCUU-CC ....((((((((((...(((.((((..-..(((.......)))..........(((((((....))))))))))------))))...-...))-------------))))))))-.. ( -39.10) >DroSim_CAF1 85051 95 + 1 GCAAAAGCCCUAAGCCAGCACACCCGA-AAGGCGUCUAAAGCCAGCAAAAAUAUGGCCACAGAAGUGGUCGGGG------UUGCGAA-GAACU-------------UGGGGCUU-CC ....((((((((((...(((.((((..-..(((.......)))..........(((((((....))))))))))------))))...-...))-------------))))))))-.. ( -39.10) >DroEre_CAF1 111558 100 + 1 G-AAAAGCCCUAAGCCAGCACACCCGA-AAGGCGUCUAAAGCCGGCAAAUAUAUGGCCGCAGAAGUGCUCGGGGCACUUCUUGUGAA-GAACU-------------UGGGGCUU-CC .-..((((((((((....(((((((..-..)).)).....((.(((.........)))))((((((((.....)))))))).)))..-...))-------------))))))))-.. ( -39.60) >DroYak_CAF1 84683 94 + 1 G-AAAAGCCCUAAGCCAGCACACCCGA-AAGGCGUCUAAAGCCGGCAAAUAUAUGACCACAAAAGUGGUAGGGG------UUGCGAA-GAACU-------------UGGGUCUG-CC .-...((.((((((...(((..(((..-..(((.......)))............(((((....))))).))).------.)))...-...))-------------)))).)).-.. ( -28.60) >DroAna_CAF1 94687 107 + 1 G-AAAUGCCUUAAGCCCACGCAGCCAAAAAGACGUCUAAAGCCAGCAAAAAUAUGGCCAUCU---CGGUGGGGG------UAGAGAGAUAGCUUGAAUUCCGGGUGUGGAGCUUCCC .-.........((((((((((.(((....((....))...((((.........)))).....---.))).((((------(.(((......)))..)))))..)))))).))))... ( -26.80) >consensus G_AAAAGCCCUAAGCCAGCACACCCGA_AAGGCGUCUAAAGCCAGCAAAAAUAUGGCCACAGAAGUGGUCGGGG______UUGCGAA_GAACU_____________UGGGGCUU_CC ....((((((((.(....)...(((.....(((.......)))...........((((((....))))))))).................................))))))))... (-20.00 = -21.45 + 1.45)
Location | 11,627,927 – 11,628,022 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.27 |
Mean single sequence MFE | -33.82 |
Consensus MFE | -20.90 |
Energy contribution | -21.82 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.23 |
Mean z-score | -2.12 |
Structure conservation index | 0.62 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752055 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11627927 95 - 22407834 GG-AAGCCCCA-------------AGUUC-UUCGCAA------CCCCGACCACUUCUGUGGCCAUAUUUUUGCUGGCUUUAGACGCCUU-UCGGGUGUGCUAGCUUAGGGCUUUUGC ((-((((((.(-------------((((.-...(((.------.(((((...(.((((.(((((((....)).))))).)))).)....-)))))..))).))))).)))))))).. ( -36.50) >DroSec_CAF1 81279 95 - 1 GG-AAGCCCCA-------------AGUUC-UUCGCAA------CCCCGACCACUUCUGUGGCCAUAUUUUUGCUGGCUUUAGACGCCUU-UCGGGUGUGCUGGCUUAGGGCUUUUGC ((-((((((.(-------------((((.-...(((.------.(((((...(.((((.(((((((....)).))))).)))).)....-)))))..))).))))).)))))))).. ( -36.40) >DroSim_CAF1 85051 95 - 1 GG-AAGCCCCA-------------AGUUC-UUCGCAA------CCCCGACCACUUCUGUGGCCAUAUUUUUGCUGGCUUUAGACGCCUU-UCGGGUGUGCUGGCUUAGGGCUUUUGC ((-((((((.(-------------((((.-...(((.------.(((((...(.((((.(((((((....)).))))).)))).)....-)))))..))).))))).)))))))).. ( -36.40) >DroEre_CAF1 111558 100 - 1 GG-AAGCCCCA-------------AGUUC-UUCACAAGAAGUGCCCCGAGCACUUCUGCGGCCAUAUAUUUGCCGGCUUUAGACGCCUU-UCGGGUGUGCUGGCUUAGGGCUUUU-C ((-((((((..-------------.....-......((((((((.....))))))))..............((((((.....(((((..-...)))))))))))...))))))))-. ( -37.80) >DroYak_CAF1 84683 94 - 1 GG-CAGACCCA-------------AGUUC-UUCGCAA------CCCCUACCACUUUUGUGGUCAUAUAUUUGCCGGCUUUAGACGCCUU-UCGGGUGUGCUGGCUUAGGGCUUUU-C ((-((.((((.-------------.....-...((((------.....(((((....))))).......)))).(((.......)))..-..)))).))))(((.....)))...-. ( -28.20) >DroAna_CAF1 94687 107 - 1 GGGAAGCUCCACACCCGGAAUUCAAGCUAUCUCUCUA------CCCCCACCG---AGAUGGCCAUAUUUUUGCUGGCUUUAGACGUCUUUUUGGCUGCGUGGGCUUAAGGCAUUU-C ...((((.((((.............((((((((....------........)---))))))).........((.((((..((....))....)))))))))))))).........-. ( -27.60) >consensus GG_AAGCCCCA_____________AGUUC_UUCGCAA______CCCCGACCACUUCUGUGGCCAUAUUUUUGCUGGCUUUAGACGCCUU_UCGGGUGUGCUGGCUUAGGGCUUUU_C ...((((((........................................((((....))))..........((((((.....((((((....))))))))))))...)))))).... (-20.90 = -21.82 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:44 2006