| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,627,715 – 11,627,818 |
| Length | 103 |
| Max. P | 0.583332 |
| Location | 11,627,715 – 11,627,818 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 87.28 |
| Mean single sequence MFE | -34.98 |
| Consensus MFE | -29.28 |
| Energy contribution | -29.84 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11627715 103 - 22407834 -------UCUACAGCCAUCUACAGCUGCUCAUAAAUGUCAGGUCGAGGUAACAACUGGCUGGCUGCAUUAAGUGACCCAGUUGUGCUUCCCUUUUGGC----GCUCGCAGCCUG -------................(((((.......(((((((..((((((.(((((((.(.(((......))).).)))))))))))))...))))))----)...)))))... ( -32.70) >DroSec_CAF1 81067 103 - 1 -------GCUACAGCCAUCUACAGCUGCUCAUAAAUGUCAGGUCGAGGUAACAACUGGGUGGCUGCAUUAAGUGACCCAGUUGUGCUUCCCUUUUGGC----GCUCGCAGCCUG -------((....))........(((((.......(((((((..((((((.(((((((((.(((......))).)))))))))))))))...))))))----)...)))))... ( -39.60) >DroSim_CAF1 84839 103 - 1 -------GCUACAGCCAUCUACAGCUGCUCAUAAAUGUCAGGUCGAGGUAACAACUGGCUGGCUGCAUUAAGUGACCCAGUUGUGCUUCCCUUUUGGC----GCUCGCAGCCUG -------((....))........(((((.......(((((((..((((((.(((((((.(.(((......))).).)))))))))))))...))))))----)...)))))... ( -33.00) >DroEre_CAF1 111336 108 - 1 AGC--CAGCUACAGCCAUCUACAGCUGCUCAUAAAUGUCAGGUCGAGGUAACAACUGGCUGGCUGCAUUAAGUGACCCAGUUGUGCUUCCCUUUUGGC----GCUCGCAGCCUG .((--.(((..((((........)))).........((((((..((((((.(((((((.(.(((......))).).)))))))))))))...))))))----))).))...... ( -36.70) >DroYak_CAF1 84451 108 - 1 AGC--CAGCUACAGCCAUCUACAGCUGCUCAUAAAUGUCAGGUCGAGGUAACAACUGGCUGGCUGCAUUAAGUGACCCAGUUGUGCUUCCCUUUUGGC----GCUCGCAGCCUG .((--.(((..((((........)))).........((((((..((((((.(((((((.(.(((......))).).)))))))))))))...))))))----))).))...... ( -36.70) >DroAna_CAF1 94450 104 - 1 UGAUGCUUGUGCAGCCUU----UGCUGCUCAUAAAUGUCAGGUCGAGGUAACAACUG----GCUGCAUUAACUGACCCAGAUGUGCUUUUCCUUUGCUGACAGCUAGCAGC--A ...((((.(((((((...----.))))).......((((((.(.((((..(((.(((----(...((.....))..)))).)))......)))).))))))))).))))..--. ( -31.20) >consensus _______GCUACAGCCAUCUACAGCUGCUCAUAAAUGUCAGGUCGAGGUAACAACUGGCUGGCUGCAUUAAGUGACCCAGUUGUGCUUCCCUUUUGGC____GCUCGCAGCCUG .......................(((((........((((((..((((((.(((((((.(.(((......))).).)))))))))))))...))))))........)))))... (-29.28 = -29.84 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:43 2006