Locus 3993

Sequence ID 2L_DroMel_CAF1
Location 11,627,422 – 11,627,526
Length 104
Max. P 0.606556
window6298

overview

Window 8

Location 11,627,422 – 11,627,526
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 84.82
Mean single sequence MFE -32.92
Consensus MFE -20.84
Energy contribution -23.80
Covariance contribution 2.96
Combinations/Pair 1.20
Mean z-score -2.01
Structure conservation index 0.63
SVM decision value 0.15
SVM RNA-class probability 0.606556
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11627422 104 - 22407834
GUGAUGUGCGCUUCUUGAGGCCUGCACAUAACCUUGUGCUGCAAUAGGUUAUGUUGCUGUGGAAAUUUUCCGGCAUCAUGCGGCCGUCUUUACAUAUGCCAAAA
..((((..(((....(((.(((.(((((((((((((.....))..)))))))).)))...(((.....)))))).))).)))..))))................ ( -31.20)
>DroSec_CAF1 80774 102 - 1
GUGAUGUGCGCAUCUUGAGGCCUGCACAUAACCUUGUGCUGCAAUAGGUUUUGUUGCUGUGGAAAUUUUGCGGCAGCAG--GGCCGUCGUUACAUAUGCCAAAA
((((((.((..........((..(((((......))))).))....(((((((((((((..((...))..)))))))))--))))))))))))........... ( -38.40)
>DroSim_CAF1 84545 102 - 1
GUGAUGUGCGCAUCUUGAGGCCUGCACAUAACCUUGUGCUGCAAUAGGUUUUGUUGCUGUGGAAAUUUUGCGGCAGCAG--GGCCGUCAUUACAUAUGCCAAAA
((((((.((..........((..(((((......))))).))....(((((((((((((..((...))..)))))))))--))))))))))))........... ( -38.80)
>DroEre_CAF1 111060 82 - 1
GUGAUGUGCGCAUCUUGAGGCCUGCAAAUAACCUUGUGCUGCA--------------------AAAUUUGCGGCAGCAG--GGCCGUCAUUACAUAUGCCAAAA
((((((.(((((..........)))......((((((((((((--------------------.....))))))).)))--))..))))))))........... ( -24.90)
>DroYak_CAF1 84142 102 - 1
GUGAUGUGCGCAUCUUGAGGCCUGCAAAUAACCUUGUGCUGCAUUAGGGUUUGUUGCUGCGCACAUUUCGUGGCAGCCG--GGUCGUCAUUACAUAUGCCAAAA
((((((.(((.((((...(((..((((..(((((((........)))))))..))))(((.(((.....))))))))))--))))))))))))........... ( -31.30)
>consensus
GUGAUGUGCGCAUCUUGAGGCCUGCACAUAACCUUGUGCUGCAAUAGGUUUUGUUGCUGUGGAAAUUUUGCGGCAGCAG__GGCCGUCAUUACAUAUGCCAAAA
((((((.((.(.....).((((.(((((......)))))...........((((((((((((.....))))))))))))..))))))))))))........... (-20.84 = -23.80 +   2.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:42 2006