Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,624,188 – 11,624,294 |
Length | 106 |
Max. P | 0.565777 |
Location | 11,624,188 – 11,624,294 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 83.89 |
Mean single sequence MFE | -48.95 |
Consensus MFE | -33.07 |
Energy contribution | -33.18 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.21 |
Mean z-score | -2.19 |
Structure conservation index | 0.68 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11624188 106 - 22407834 UGCU---UACUGCUGAUGUGGGCGGUGG---UGGUGUUGCCACCACUGCGGCUGGUGGUGGAGUUGCAACCGCUGGCAGGCUGGUGGGUGACUGGGCGAAUCGGUAGCCGGG .(((---(((((((.......(((((((---(((.....)))))))))).((..(((((.........)))))..)).))).)))))))..((.(((.........))).)) ( -50.00) >DroSec_CAF1 77498 106 - 1 UGCU---UACUGCUGAUGUGGGCGGUGG---UGGUGUUGCCACCACUGCGGCUGGUGGUGGAGUUGCAACCGCUGGCAGGCUGGUGGGUGACUGGGCGAAUCGGUAGCCGGG .(((---(((((((.......(((((((---(((.....)))))))))).((..(((((.........)))))..)).))).)))))))..((.(((.........))).)) ( -50.00) >DroSim_CAF1 81277 106 - 1 UGCU---UACUGCUGAUGUGGGCGGUGG---UGGUGUUGCCACCACUGCGGCUGGUGGUGGAGUUGCAACCGCUGGCAGGCUGGUGGGUGACUGGGCGAAUCGGUAGCCGGG .(((---(((((((.......(((((((---(((.....)))))))))).((..(((((.........)))))..)).))).)))))))..((.(((.........))).)) ( -50.00) >DroEre_CAF1 107887 106 - 1 UGCA---AGCUGCUGAUGUGGGCGCUGG---UGGUGUGGCCACCACUGCGGCUGGUGGUGGAGUUGCGGCCGCUGGCAGGCUGGUGGGUGACUGGGCGAAGCGGUAGCCGGG ..(.---.(((((((........((..(---(((((..(((((((((......))))))))..)..).)))))..)).(.(..((.....))..).)....)))))))..). ( -46.10) >DroYak_CAF1 80902 109 - 1 UGCU---UACUGCUGAUGUGGGCGGUGGUGGUGGUGUGGCCACCACUGCUGCUGGUGGUGGAUUUGCAACCGCUGGCAGGCUGGUGGGUGACUGGGCGAAGCGGUAGCCGGG .(((---.((((((......((((((((((((......))))))))))))((..(((((.........)))))..)).(.(..((.....))..).)..))))))))).... ( -51.90) >DroAna_CAF1 90899 103 - 1 UGGGUGGUGCUGCUGCUGGUGGCAGUGC---CGGUGCUCCCUCAAUGGCACCACCUGGCAUGG------GUGCUGGCUGGCUGGUGGGUGAUUGGGCGAAGCGGUAUCCUGG .((((((..((((((....))))))..)---)(.((((.(((((((.((.(((((.(((...(------((....))).)))))))))).)))))).).)))).)))))... ( -45.70) >consensus UGCU___UACUGCUGAUGUGGGCGGUGG___UGGUGUUGCCACCACUGCGGCUGGUGGUGGAGUUGCAACCGCUGGCAGGCUGGUGGGUGACUGGGCGAAGCGGUAGCCGGG .........((((((((....(((((((...(((.....))))))))))..(((.((((((........)))))).)))(((..(((....))))))..))))))))..... (-33.07 = -33.18 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:39 2006