Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,612,243 – 11,612,349 |
Length | 106 |
Max. P | 0.959014 |
Location | 11,612,243 – 11,612,349 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 93.92 |
Mean single sequence MFE | -22.77 |
Consensus MFE | -19.88 |
Energy contribution | -20.05 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.87 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11612243 106 + 22407834 AAUUUAAUAACUU-UGGUCCGGACCCAAUGCAAUUUUGUAAAAUUCUCUAGCAAAAUUAAUUAGUCAAACAAUCCAUCAGGACGCAAACCGGACCUCCUUAACGUGG .............-.(((((((......(((((((((((...........))))))))..............(((....))).)))..)))))))............ ( -21.60) >DroSec_CAF1 66948 107 + 1 AAUUUAAUAACUUCCGGUCCGGGCCCAAUGCAAUUUUGUAAAAUUCUCUAGCAAAAUUAAUUAGUCAAACAAUCCAUCAGGACGCAAACCGGACCUCCUUAACGUGG ...............(((((((......(((((((((((...........))))))))..............(((....))).)))..)))))))............ ( -23.00) >DroSim_CAF1 70871 106 + 1 AAUUUAAUAACUU-UGGUCCGGGCCCAAUGCAAUUUUGUAAAAUUCUCUAGCAAAAUUAAUUAGUCAAACAAUCCAUCAGGACGCAAACCGGACCUCCUUAACGUGG .............-.(((((((......(((((((((((...........))))))))..............(((....))).)))..)))))))............ ( -22.70) >DroEre_CAF1 97624 106 + 1 AAUUUAAUAACUU-UGGUCCGGGCCAAAUGCAAUUUUGUAAAAUUCUCUAGCAAAAUUAAUUAGUCAAACAAUCCAUCAGGACGCAAACCGGACCGCCUUAACGUGG .............-.(((((((......(((((((((((...........))))))))..............(((....))).)))..)))))))............ ( -23.20) >DroYak_CAF1 69177 106 + 1 AAUUUAAUAACUU-UGGUCCGGGCCCAAUGCAAUUUUGUAAAAUUCUCUAGCAAAAUUAAUUAGUCAAACAAUCCAUCAGGACGCAAACCGGACCUCCUCAAUGAGG .............-.(((((((......(((((((((((...........))))))))..............(((....))).)))..))))))).((((...)))) ( -24.90) >DroAna_CAF1 79995 97 + 1 AAUUUAAUAACUU-UGGUCCGGGCCAAAUGCAAUUUUGUGAAAUUUUCUAGCAAAAUUAAUUAGUCAAACAAUCCAUCAGGA------CCGGAC---CUUAACGUGG .............-.(((((((.........((((((((...........))))))))..............(((....)))------))))))---)......... ( -21.20) >consensus AAUUUAAUAACUU_UGGUCCGGGCCCAAUGCAAUUUUGUAAAAUUCUCUAGCAAAAUUAAUUAGUCAAACAAUCCAUCAGGACGCAAACCGGACCUCCUUAACGUGG ...............(((((((.........((((((((...........))))))))..............(((....)))......)))))))............ (-19.88 = -20.05 + 0.17)
Location | 11,612,243 – 11,612,349 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 93.92 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -23.03 |
Energy contribution | -23.87 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.87 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11612243 106 - 22407834 CCACGUUAAGGAGGUCCGGUUUGCGUCCUGAUGGAUUGUUUGACUAAUUAAUUUUGCUAGAGAAUUUUACAAAAUUGCAUUGGGUCCGGACCA-AAGUUAUUAAAUU ............(((((((.....((((....)))).......(((((((((((((.((((....)))))))))))).)))))..))))))).-............. ( -26.30) >DroSec_CAF1 66948 107 - 1 CCACGUUAAGGAGGUCCGGUUUGCGUCCUGAUGGAUUGUUUGACUAAUUAAUUUUGCUAGAGAAUUUUACAAAAUUGCAUUGGGCCCGGACCGGAAGUUAUUAAAUU .....((((.((..(((((((((.(.((..((((((((......)))))(((((((.((((....))))))))))).)))..)).))))))))))..)).))))... ( -28.00) >DroSim_CAF1 70871 106 - 1 CCACGUUAAGGAGGUCCGGUUUGCGUCCUGAUGGAUUGUUUGACUAAUUAAUUUUGCUAGAGAAUUUUACAAAAUUGCAUUGGGCCCGGACCA-AAGUUAUUAAAUU ............(((((((...((((((....)))).......(((((((((((((.((((....)))))))))))).)))))))))))))).-............. ( -27.50) >DroEre_CAF1 97624 106 - 1 CCACGUUAAGGCGGUCCGGUUUGCGUCCUGAUGGAUUGUUUGACUAAUUAAUUUUGCUAGAGAAUUUUACAAAAUUGCAUUUGGCCCGGACCA-AAGUUAUUAAAUU ............(((((((.....((((....)))).......((((.((((((((.((((....))))))))))))...)))).))))))).-............. ( -23.70) >DroYak_CAF1 69177 106 - 1 CCUCAUUGAGGAGGUCCGGUUUGCGUCCUGAUGGAUUGUUUGACUAAUUAAUUUUGCUAGAGAAUUUUACAAAAUUGCAUUGGGCCCGGACCA-AAGUUAUUAAAUU ((((...)))).(((((((...((((((....)))).......(((((((((((((.((((....)))))))))))).)))))))))))))).-............. ( -30.70) >DroAna_CAF1 79995 97 - 1 CCACGUUAAG---GUCCGG------UCCUGAUGGAUUGUUUGACUAAUUAAUUUUGCUAGAAAAUUUCACAAAAUUGCAUUUGGCCCGGACCA-AAGUUAUUAAAUU .........(---((((((------.((.((((.(...((((.......((((((.....))))))...))))..).)))).)).))))))).-............. ( -23.40) >consensus CCACGUUAAGGAGGUCCGGUUUGCGUCCUGAUGGAUUGUUUGACUAAUUAAUUUUGCUAGAGAAUUUUACAAAAUUGCAUUGGGCCCGGACCA_AAGUUAUUAAAUU ............(((((((.....((((....)))).......(((((((((((((.((((....)))))))))))).)))))..)))))))............... (-23.03 = -23.87 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:34 2006