Locus 3986

Sequence ID 2L_DroMel_CAF1
Location 11,608,210 – 11,608,308
Length 98
Max. P 0.544027
window6286

overview

Window 6

Location 11,608,210 – 11,608,308
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.86
Mean single sequence MFE -24.76
Consensus MFE -14.38
Energy contribution -13.63
Covariance contribution -0.75
Combinations/Pair 1.27
Mean z-score -1.40
Structure conservation index 0.58
SVM decision value 0.02
SVM RNA-class probability 0.544027
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11608210 98 - 22407834
-UCGCAGUUCUG------AAUA------CGGACUGGCAGCUAAUUUUUGCCAGCUGUCAACG---CUCU------CCAUAUAAAUCCCUCAAAGUCAGCAGCACUGCACCCACGUGACAC
-..(((((.(((------...(------(((.(((((((.......)))))))))))....(---((..------.................)))...))).)))))............. ( -22.11)
>DroPse_CAF1 59949 96 - 1
--GGC----------------AGCCUGUCAGAGUGGCAGCUAAUUUUUGCUAGCUGUCGACGUUGCUCU------UCAUAUAAAUCUUUCAAAGUCAACAGCAUUGCACCCACGUGCCAC
--(((----------------(((.((((.....)))))))......(((..(((((.(((.(((....------..............))).))).)))))...))).......))).. ( -24.77)
>DroEre_CAF1 93585 96 - 1
-UCGCAUUUCCG------AAUA------CGGACUGGCAGCUAAUUUUUGCCAGCUGUCAACG---CUCC------CCA--UAAAUCCCUCAAAGUCAGCAGCACUGCACCCACGUGACAC
-..((...((((------....------)))).((((((((..........))))))))..)---)...------...--.............(((((((....))).......)))).. ( -20.71)
>DroYak_CAF1 64934 104 - 1
-UCGCAUUUCCGAAACCGAAUA------CGGACUGGCAGCUAAUUUUUGCCAGCUGUCAACG---CUCU------CCAUAUAAAUCCCUCAAAGUCAGCAGCACUGCACCCACGUGACAC
-((((......((...((...(------(((.(((((((.......)))))))))))...))---...)------).....................(((....)))......))))... ( -20.40)
>DroAna_CAF1 76671 117 - 1
CUGGCAGCCGGGUAGCCUCAUAGCCUGGCAUCCUGGCAGCUAAUUUUUGCCAGCUGUCAGCA---CACUCUCUAGCCAUAUAAAUCCCUCAAAGUCAACGGCAUUGCACCCACGUGACAC
.((((.(((((((.........)))))))...(((((((((..........)))))))))..---.........))))...............((((.((............)))))).. ( -35.80)
>DroPer_CAF1 62398 96 - 1
--GGC----------------AGUCUGUCAGAGUGGCAGCUAAUUUUUGCUAGCUGUCGACGUUGCUCU------UCAUAUAAAUCUUUCAAAGUCAACAGCAUUGCACCCACGUGCCAC
--(((----------------((.(((((.....)))))))......(((..(((((.(((.(((....------..............))).))).)))))...))).......))).. ( -24.77)
>consensus
_UCGCA_UUC_G______AAUA______CAGACUGGCAGCUAAUUUUUGCCAGCUGUCAACG___CUCU______CCAUAUAAAUCCCUCAAAGUCAACAGCACUGCACCCACGUGACAC
...((............................((((((.......))))))(((((..((................................))..)))))...))............. (-14.38 = -13.63 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:30 2006