Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,603,508 – 11,603,625 |
Length | 117 |
Max. P | 0.545524 |
Location | 11,603,508 – 11,603,625 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 94.13 |
Mean single sequence MFE | -25.87 |
Consensus MFE | -22.44 |
Energy contribution | -22.67 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -1.36 |
Structure conservation index | 0.87 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11603508 117 - 22407834 AAGUGUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUGUGUAACAAAGUCUAAA-AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU ...(((((.(((((((....(((.(((((..((((........))))..)))))....)))....-))))).)).)))))..(((......)))(((.((((....)))))))..... ( -26.60) >DroSec_CAF1 58148 117 - 1 AAGUGUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUGUGUAACAAAGUCUAAA-AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU ...(((((.(((((((....(((.(((((..((((........))))..)))))....)))....-))))).)).)))))..(((......)))(((.((((....)))))))..... ( -26.60) >DroSim_CAF1 60879 117 - 1 AAGUGUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUUGAAUGUGUGUAACAAAGUCUAAA-AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU ...(((((.(((((((....(((.(((((..((((........))))..)))))....)))....-))))).)).)))))..(((......)))(((.((((....)))))))..... ( -26.60) >DroEre_CAF1 89095 113 - 1 ----GUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUGUGUAACAAAGUCUAAA-AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU ----((((.(((((((....(((.(((((..((((........))))..)))))....)))....-))))).)).))))...(((......)))(((.((((....)))))))..... ( -25.70) >DroYak_CAF1 60129 113 - 1 ----GUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUGUGUAACAAAGUCUAAA-AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU ----((((.(((((((....(((.(((((..((((........))))..)))))....)))....-))))).)).))))...(((......)))(((.((((....)))))))..... ( -25.70) >DroAna_CAF1 72142 118 - 1 GUGUGUGUGUGUGUUUUUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUUUGUAACAAAGUCUAAAAAAACAUCAAGCACAAACAUCGAACAGCGGCAAGUUUAUCUAAAGUACAACAU .((((..((.(((..(((((.((....(((((...)))))((((.(((((((......((........)).......)))))))))))...)).)))))..))).))...)))).... ( -24.02) >consensus AAGUGUGCAUGUGUUUCUGUGGCAUUACGUGCAUUGCAUGUCGAAUGUGUGUAACAAAGUCUAAA_AAACAUCAAGCACAAACACAAAGCAGUGGUAACUUUAUCUAAAGUACAACAU ....((((.(((((((....(((.(((((..((((........))))..)))))....))).....))))).)).))))...(((......)))(((.((((....)))))))..... (-22.44 = -22.67 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:27 2006