Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,217,177 – 1,217,269 |
Length | 92 |
Max. P | 0.655238 |
Location | 1,217,177 – 1,217,269 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 92.34 |
Mean single sequence MFE | -13.64 |
Consensus MFE | -11.50 |
Energy contribution | -11.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.84 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1217177 92 - 22407834 CCCCAUCCACACGUGCUUAAAGCUCAGACUCACACACACUCACACACUCGCACAAUGCCGGCCAUUAAACACGCAUUCUUUGGCCAUAGAAA ............((((.................................))))......(((((................)))))....... ( -11.50) >DroSim_CAF1 12826 92 - 1 CCCCAUCCACACGUGCUUAAAGCUCAGACUCACACACACUCACACACUCGCACAAUGCCGGCCAUUAAACACGCAUUCUUUGGCCAUAGAAA ............((((.................................))))......(((((................)))))....... ( -11.50) >DroEre_CAF1 12559 88 - 1 CCCCAACCACACGUGCUUAAAGCCCAGACUCACUCAC----ACACACUCGCACAAUGCCGGCCAUUAAGCACGCAUUCUUUGGCCAUAGAAA ..((((.....(((((((((.(((..((.....))..----........((.....)).)))..)))))))))......))))......... ( -18.40) >DroYak_CAF1 13626 84 - 1 CCCCAUCCACACGUGCUUAAAGCUCAGACU----CGC----ACACACUCGCACAAUGCCGGCCAUUAAACACGCAUUCUUUGGCCAUAGAAA ............((((..............----.))----))....((((.....)).(((((................)))))...)).. ( -13.15) >consensus CCCCAUCCACACGUGCUUAAAGCUCAGACUCACACAC____ACACACUCGCACAAUGCCGGCCAUUAAACACGCAUUCUUUGGCCAUAGAAA ............((((.................................))))......(((((................)))))....... (-11.50 = -11.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:58 2006