Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,597,076 – 11,597,188 |
Length | 112 |
Max. P | 0.659715 |
Location | 11,597,076 – 11,597,188 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.40 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -14.80 |
Energy contribution | -16.22 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.32 |
Mean z-score | -1.70 |
Structure conservation index | 0.53 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.659715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11597076 112 + 22407834 ACACACACGUAUG--------UAUAUAUGCUCGGGUUUGUUCAGCAAUUAUGUAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAUACAUUUUCGCGGCAGCUUUUAAU ........(((((--------(.....((((((((..((((..(((....))).)))).)))))))).))))))...............................((....))....... ( -22.50) >DroPse_CAF1 48515 96 + 1 ACA--------------CUCGCAUUUGUGCAACUGUUUGUUUAACAAUUAUGCAAAUGUU----GCAUACAUUUUAGUCUGUUUUUUGUUUUGU------UUUUCGUGGCAGCCUAAAAA ...--------------........((((((((.((((((.((.....)).)))))))))----)))))..((((((.(((((...((......------....)).))))).)))))). ( -20.20) >DroSec_CAF1 51247 120 + 1 ACACACACGUGUGUGUAUCUGUAUCUAUGCCCGGGUUUGCUGAGCAAUUAUGUAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAAACAUUUUCGCGGCAGGUUUUAAU (((((....)))))((((..((((...((((((((((((((((....))).)))))...))))))))...))))..)))).............((((((.............)))))).. ( -34.32) >DroSim_CAF1 53910 119 + 1 -CACACACGUGUGUGUAUCUGUAUCUAUGCCCGGGCUUGUUGAGCAAUUAUGUAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAAACAUUUUCGCGGCAGAUUUUAAU -(((((....))))).((((((.....((((((((..((((..(((....))).)))).))))))))....(((..(........)..))).................))))))...... ( -30.50) >DroEre_CAF1 82229 107 + 1 -------C------GUAUCUGCAUCUGUGCUCGGGUUUGUUAAGCAAUUAUGCAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAAACAUAUUCGCGGCAGCUUUUAAU -------.------((((..((((.(.((((((((((((((((....))).)))))...)))))))).).))))..)))).........................((....))....... ( -29.50) >DroYak_CAF1 53250 111 + 1 -------CG--AAUGUAUCUGUAUCUAUGCUCGGGUUUGUAGAGCAAUUAUGCAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAAACAUUUUCGCGGCAGCAUUUAAU -------.(--(((((((..((((...((((((((((((((((....)).))))))...))))))))...))))..)))))))).....................((....))....... ( -30.40) >consensus _CA____CG__UG_GUAUCUGUAUCUAUGCUCGGGUUUGUUGAGCAAUUAUGCAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAAACAUUUUCGCGGCAGCUUUUAAU ..............((((..((((...((((((((........(((....)))......))))))))...))))..))))........................................ (-14.80 = -16.22 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:20 2006