Locus 3975

Sequence ID 2L_DroMel_CAF1
Location 11,590,185 – 11,590,292
Length 107
Max. P 0.955853
window6266

overview

Window 6

Location 11,590,185 – 11,590,292
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.53
Mean single sequence MFE -20.67
Consensus MFE -11.06
Energy contribution -11.46
Covariance contribution 0.40
Combinations/Pair 1.11
Mean z-score -3.02
Structure conservation index 0.54
SVM decision value 1.46
SVM RNA-class probability 0.955853
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11590185 107 - 22407834
GCAAGUUCAUAACUACAACUUGAACUUCCUGCAG------------CUAACCCUUUGCCUUGCUGCAAAUAACAAAAAACAAACUCGCACUGCAAUCCAAUAAAAA-AGAGCAGUAAACU
(((((((((...........)))))))..(((((------------(..............))))))...................))(((((.............-...)))))..... ( -20.93)
>DroSec_CAF1 44275 106 - 1
GCAAGUUCAUAACUACAACUUGAACUUCUUGCAG------------CUAACCCUUUGC-UUGCUGCAAAUAACAAAUAACAAACUCGCACUGCAAUCCAAUAAAAA-AAAGCAGUAAACU
(((((((((...........))))))).((((((------------(...........-..)))))))..................))(((((.............-...)))))..... ( -21.91)
>DroSim_CAF1 46956 101 - 1
GCAAGUUCAUAACUACAACUGGAACUUCCUGCAG------------CUAACCCUUU-----GCUGCAAAUAACAAAUAACAAACUCGCACUGCAAUCCAAUAAAA--AAAGCAGUAAACU
((((((((.............))))))..(((((------------(.........-----))))))...................))(((((............--...)))))..... ( -19.48)
>DroEre_CAF1 75490 112 - 1
GAGAGUUCAUAACUACAACUUGAACUUCCUGCAGCGCUCUGAAAGUCUAAUCCUUUGU-UUGCUGCAGAUA-------ACAAACUCGUACUGCAAUCCAAUAAAAACAAAGCCGUAAACU
(((((((((...........))))))..((((((((..(..((((.......))))).-.))))))))...-------.....))).(((.((.................)).))).... ( -21.73)
>DroYak_CAF1 46097 111 - 1
GCAAGUUCAUAACUACAACUUGAACUUCCUGCUGCGCUCUGAAAGUCUAAUGCUUUGU-UUGCUGCAAACA-------ACAAACUCGUACUGCAAUCCAAUAAAAA-AAAGCAGUAAACU
(.(((((((...........))))))).)((((((((....(((((.....)))))..-..))((((....-------((......))..))))............-...)))))).... ( -19.30)
>consensus
GCAAGUUCAUAACUACAACUUGAACUUCCUGCAG____________CUAACCCUUUGC_UUGCUGCAAAUAACAAA_AACAAACUCGCACUGCAAUCCAAUAAAAA_AAAGCAGUAAACU
(((((((((...........)))))))..(((((............................)))))...................))(((((.................)))))..... (-11.06 = -11.46 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:10 2006