Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,589,303 – 11,589,405 |
Length | 102 |
Max. P | 0.508123 |
Location | 11,589,303 – 11,589,405 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 86.02 |
Mean single sequence MFE | -24.29 |
Consensus MFE | -17.75 |
Energy contribution | -17.42 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.16 |
Mean z-score | -1.84 |
Structure conservation index | 0.73 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11589303 102 - 22407834 CAAUGAGUUGCUUUCUUCGGGUAUGCGCAUUCAAGGGU--UUCAAAAUGGCAACCCUUCUUUAUAUGUCACAAUAAAUGAAAGUUCACUGUGUACCCAUUCAAA---- ..................((((((((((((..((((((--(((.....)).)))))))......)))).........(((....)))..)))))))).......---- ( -20.80) >DroSec_CAF1 43393 105 - 1 C-AUGAGGUGAUUUCUUCGGGUAUGCGCAUUUAAAGGU--UUUAAACCGGCAACACUACUGUAUAUGCCACAAUAAAUGAAAGUACACUGUAUACCCAUUGAAAUGUA .-..((((......))))((((((((.((((((..(((--.....)))((((..((....))...))))....))))))..((....))))))))))........... ( -27.00) >DroSim_CAF1 46068 108 - 1 CAAUGAGGUGAUUUCUUCGGGUAUGCACAUUUAAGGGUAUUUUAAAACGGCAACACUACUCUAUAUGCCACAAUAAAUGAAAGUACACUGUAUACCCAUUGAAAUGUA ((((((((......))))((((((((.((((((..(((((........(....)..........)))))....))))))..((....))))))))))))))....... ( -25.07) >consensus CAAUGAGGUGAUUUCUUCGGGUAUGCGCAUUUAAGGGU__UUUAAAACGGCAACACUACUCUAUAUGCCACAAUAAAUGAAAGUACACUGUAUACCCAUUGAAAUGUA ....((((......))))(((((((((.....................((((.............)))).......((....))....)))))))))........... (-17.75 = -17.42 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:09 2006