| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,588,752 – 11,588,909 |
| Length | 157 |
| Max. P | 0.992691 |
| Location | 11,588,752 – 11,588,869 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 95.22 |
| Mean single sequence MFE | -30.84 |
| Consensus MFE | -30.18 |
| Energy contribution | -29.62 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.98 |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.992691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11588752 117 + 22407834 --ACAACAGGAUGGCGAAAAGUUGAAGGGAAAAUCAGGCAACAAUAAUAACGGCAAGGGCUUACUUAAUUUUCCCGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGA --.....(((.((((((.........((((((((..(....).........(((....)))......))))))))(((((((((....))..)))))))))))))..)))......... ( -31.90) >DroSec_CAF1 42851 116 + 1 --ACAAAAGGAUGGCGAAAAGUUGA-GGGAAAAUCAGGCAACAAUAAUAACGGCAAGGGCUUACUCCAUUUUCCCGCGGAGGGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGA --.....(((.((((((........-((((((((..(....)..............(((.....)))))))))))((((((.((....))...))))))))))))..)))......... ( -31.70) >DroSim_CAF1 45533 116 + 1 --ACAACGGGAUGGCGAAAAGUUGA-GGGAAAAUCAGGCAACAAUAAUAACGGCAAGGGCUUACUCCAUUUUCCCGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGA --.....((..((((((........-((((((((..(....)..............(((.....)))))))))))(((((((((....))..)))))))))))))..)).......... ( -34.00) >DroEre_CAF1 74041 118 + 1 CAACUACAGGAAGGCGAAAAGUUGA-GGGAAAAUCAGGCAACAAUAAUAACGGCAAGGGCUUACUCCAUUUUUCCGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGA .......(((..(((((........-((((((((..(....)..............(((.....)))))))))))(((((((((....))..))))))))))))...)))......... ( -28.30) >DroYak_CAF1 44698 116 + 1 --ACAACAGGAAGGCGAAAAGUUGA-GGGAAAAUCAGGCAACAAUAACGACGGCAAGGGCUUACUCCAUUUUUCCGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGA --.....(((..(((((........-((((((((..(....)..............(((.....)))))))))))(((((((((....))..))))))))))))...)))......... ( -28.30) >consensus __ACAACAGGAUGGCGAAAAGUUGA_GGGAAAAUCAGGCAACAAUAAUAACGGCAAGGGCUUACUCCAUUUUCCCGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGA .......(((..(((((.........((((((((..(....).........(((....)))......))))))))(((((((((....))..))))))))))))...)))......... (-30.18 = -29.62 + -0.56)
| Location | 11,588,790 – 11,588,909 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.57 |
| Mean single sequence MFE | -24.77 |
| Consensus MFE | -24.15 |
| Energy contribution | -23.79 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11588790 119 + 22407834 ACAAUAAUAACGGC-AAGGGCUUACUUAAUUUUCCCGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGAAAUUAAAUUUUUUACACUUGAGAAGCUCGCAGCUUCAAAU ...........(((-..((((((.(((((.......(((((((((....))..)))))))(((..............))).................)))))))))))...)))...... ( -25.74) >DroPse_CAF1 43330 116 + 1 ---ACAACGGCGGCCAAGGGCUUACUCCAUUUU-CAGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGAAAUUAAAUUUUUUACACUUGAGAAGUUCGCAGCUUCAAAU ---.....(((.((...((((((.(((......-..(((((((((....))..)))))))(((..............)))...................))))))))))).)))...... ( -24.04) >DroSec_CAF1 42888 119 + 1 ACAAUAAUAACGGC-AAGGGCUUACUCCAUUUUCCCGCGGAGGGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGAAAUUAAAUUUUUUACACUUGAGAAGCUCGCAGCUUCAAAU .......((((((.-..(((.............)))((((((.((....))...))))))))))))...................................(((((.....))))).... ( -25.32) >DroYak_CAF1 44735 119 + 1 ACAAUAACGACGGC-AAGGGCUUACUCCAUUUUUCCGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGAAAUUAAAUUUUUUACACUUGAGAAGCUCGCAGCUUCAAAU ........((.(((-..((((((.(((.........(((((((((....))..)))))))(((..............)))...................)))))))))...))))).... ( -26.84) >DroAna_CAF1 57278 107 + 1 ------------GC-AAGGGCUUACUCCACUUUUCCGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGAAAUUAAAUUUUUUACACUUGAGAAGUUCGCAGCUUCAAAU ------------((-..((((((.(((.........(((((((((....))..)))))))(((..............)))...................)))))))))...))....... ( -22.24) >DroPer_CAF1 43401 115 + 1 ---ACAACGGCGGC-AAGGGCUUACUCCAUUUU-CAGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGAAAUUAAAUUUUUUACACUUGAGAAGUUCGCAGCUUCAAAU ---.....(((.((-..((((((.(((......-..(((((((((....))..)))))))(((..............)))...................))))))))))).)))...... ( -24.44) >consensus ___AUAACGACGGC_AAGGGCUUACUCCAUUUU_CCGCGGAGAGCGAAAGCAAUUUCCGUUCGUUAAACCUACAUUUCGAAAUUAAAUUUUUUACACUUGAGAAGCUCGCAGCUUCAAAU ...........(((...((((((.(((.........(((((((((....))..)))))))(((..............)))...................)))))))))...)))...... (-24.15 = -23.79 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:08 2006