Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,588,639 – 11,588,731 |
Length | 92 |
Max. P | 0.900604 |
Location | 11,588,639 – 11,588,731 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 76.02 |
Mean single sequence MFE | -21.15 |
Consensus MFE | -5.63 |
Energy contribution | -7.15 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.10 |
Mean z-score | -2.03 |
Structure conservation index | 0.27 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11588639 92 - 22407834 GAA-AAGCAAAGUAAAUGCAAAGCCAGAAACAAAGUCGUUCGAAAGCAUCGAGUCCCAGCCAAAAGUGUAUCUCAUUUGUGUUUUCGU-UUUCA (((-(((((.......))).....................(((((((((.(((.....((.....))....)))....))))))))))-)))). ( -15.00) >DroPse_CAF1 43245 73 - 1 AAAACAGCAAAAAAAAAACAAA----AAAA------CGAG--GAAGCGG---------CUAAAAAAUGUAUCUCAUUUGGGUUUUCAUUUUGCA ......((((((..(((((...----.(((------.(((--(.....(---------(........)).)))).)))..)))))..)))))). ( -12.50) >DroSec_CAF1 42737 93 - 1 GAAAAAGCAAAGUAAAUGCAAAGCCAGAAACAAAGUCGAUGGAAAGCAUCGAGUCCCAGGCGAAAGCGUAUCUCAUUUGUGUUUUCGU-UUGCA ......((((((.(((((((((...(((.((....((((((.....)))))).......((....)))).)))..))))))))).).)-)))). ( -26.90) >DroSim_CAF1 45419 93 - 1 GAAAAAGCAAAGUAAAUGCAAAGCCAGAAACAAAGUCGAUGGAAGGCAUCGAGUCCCAUGCGAAAGCGUAUCUCAUUUGUGUUUUCGU-UUGCA ......((((((.(((((((((...(((.((....((((((.....)))))).......((....)))).)))..))))))))).).)-)))). ( -26.90) >DroEre_CAF1 73908 93 - 1 GAAAAAGCAAAGUAAAUGCAAAGCCAGAAGUAAAGUCGGGCGAGAGCAGAGAUUCCCGGCCGAAAACGUAUCUCAUUUGUGUUUUCGU-UUGCA ......((((((.(((((((((...(((.......((((.((.(((......))).)).)))).......)))..))))))))).).)-)))). ( -24.44) >consensus GAAAAAGCAAAGUAAAUGCAAAGCCAGAAACAAAGUCGAUCGAAAGCAUCGAGUCCCAGCCGAAAGCGUAUCUCAUUUGUGUUUUCGU_UUGCA ......((((.(.(((..((((...(((.((....(((......................)))....)).)))..))))..))).)...)))). ( -5.63 = -7.15 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:06 2006