Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,587,449 – 11,587,553 |
Length | 104 |
Max. P | 0.547453 |
Location | 11,587,449 – 11,587,553 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 96.47 |
Mean single sequence MFE | -15.18 |
Consensus MFE | -13.02 |
Energy contribution | -13.85 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.86 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547453 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11587449 104 - 22407834 AACUAAUCAAACUUUUUGCAGGAUAACCGAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC ....................((....))(((((((...(((((((((((......)))).....((((((.......))))))))))))).......))))))) ( -16.30) >DroSec_CAF1 41719 104 - 1 AACUAAUCAAACUUUUUGCAGGAUAGCCGAAACGACACAAAAUGCGCCAAACAAAUUACUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC ....................((....))(((((((...((((((((.....)............((((((.......))))))))))))).......))))))) ( -11.20) >DroSim_CAF1 44372 104 - 1 AACUAAUCAAACUUUUUGCCGGAUAACCGAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC ....................((....))(((((((...(((((((((((......)))).....((((((.......))))))))))))).......))))))) ( -16.40) >DroEre_CAF1 72547 104 - 1 AACUAAUCAAACUUUCUGCAGGAUAACCGAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC ....................((....))(((((((...(((((((((((......)))).....((((((.......))))))))))))).......))))))) ( -16.30) >DroYak_CAF1 43373 104 - 1 AACUAAUCAAACUUUUUGCAGGAUAACCAAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC ....................((....)).((((((...(((((((((((......)))).....((((((.......))))))))))))).......)))))). ( -13.50) >DroAna_CAF1 56303 104 - 1 AACUAAUCAAACUUUUUCCAGGAUAACCGAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUGCAGACUUUCUCUC ....................((....))((((.....((((((((((((......)))).....((((((.......)))))))))))))).....)))).... ( -17.40) >consensus AACUAAUCAAACUUUUUGCAGGAUAACCGAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC ....................((....))(((((((...(((((((((((......)))).....((((((.......))))))))))))).......))))))) (-13.02 = -13.85 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:03 2006