Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,214,701 – 1,214,818 |
Length | 117 |
Max. P | 0.933248 |
Location | 1,214,701 – 1,214,818 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.73 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -18.60 |
Energy contribution | -18.38 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.24 |
Mean z-score | -1.28 |
Structure conservation index | 0.78 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1214701 117 + 22407834 AAUAAUCUUG-UAUAUAUUUCCCUUACUCAUUCCAUUCAUCCAGGCCCACUGUGCAGUUCCGUCUCUGGCCGUGGCAAUUGCCACUUUUGGC--CCGGAUUGCAUCGUCGCCUUCAUUGU ..........-...............................((((..((.(((((((.(((.....(((((((((....)))))....)))--))))))))))).)).))))....... ( -31.40) >DroSec_CAF1 10375 112 + 1 UAUAAUCUUG-UAUA-----CCCUUACUCAUUCUUUUCAUGCAGUCCCACUGUGCAGUUUCGUCUCUGGCCGUGGCAAUUGCCACUUUUGGU--CCGGAUUGCAUCGUCGCCUUCAUUGU .........(-((..-----....)))...........(((((((((.(((....))).........(((((((((....)))))....)))--).)))))))))............... ( -24.70) >DroSim_CAF1 10433 117 + 1 AAUAAUCUUG-UAUACAUUGCCCUUACUCAUUCCUUUCAUCCAAUUCCACUGUGCAGUUUCGUCUCUGGUCGUGGCAAUUGCCACUUUUGGU--CCGGAUUGCAUCGUCGCCUUCAUUGU ..........-.....................................((.((((((((.((...(..(..(((((....)))))..)..).--.)))))))))).))............ ( -21.50) >DroEre_CAF1 9951 113 + 1 AGUAAUCUUUAAAAUUAUUUCGUUCUCCCACUUACCUUG-----CCCCACUGUGCAGUUUUGUCUCUGGCCGUGGCAAUUGCCACUUUUGGC--CCGGAUUGCAUCGUCGCCUUCAUUGU .(((((((............................(((-----(........))))..........(((((((((....)))))....)))--).)))))))................. ( -23.10) >DroYak_CAF1 10797 116 + 1 AAAAAUCUUC-AGUUUAUUUAUUUCACUCACUUCCUUUUUCCA-UCCCACUGUGCAGUUUUGUUUCUAGUCGUGGCAAUUGCCACUUUUGGC--CCGGAUUGCAUCGUCGCCUUCAUUGU ..........-................................-....((.((((((((..(...((((..(((((....)))))..)))).--)..)))))))).))............ ( -20.20) >DroPer_CAF1 14007 111 + 1 -------AUU-CAUAUGCCUUCCCUGCCCAAAAAAUAGCUCCCCACCCACUGUGCGGGGCUGUC-CUCGUCCUGGCAAUUGCCACUUUUACCCUCUGCAUUGCAUCGUCGUCUUCAUUGU -------...-...((((......(((.......((((((((.(((.....))).)))))))).-.......((((....))))............)))..))))............... ( -21.90) >consensus AAUAAUCUUG_UAUAUAUUUCCCUUACUCAUUCCAUUCAUCCA_UCCCACUGUGCAGUUUCGUCUCUGGCCGUGGCAAUUGCCACUUUUGGC__CCGGAUUGCAUCGUCGCCUUCAUUGU ................................................((.(((((((((.(...((((..(((((....)))))..))))...).))))))))).))............ (-18.60 = -18.38 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:57 2006