Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,587,249 – 11,587,342 |
Length | 93 |
Max. P | 0.804874 |
Location | 11,587,249 – 11,587,342 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 79.47 |
Mean single sequence MFE | -18.56 |
Consensus MFE | -13.50 |
Energy contribution | -13.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.73 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11587249 93 - 22407834 ------CUACCCAGCCACCAAGCGAA-CCACUCACUCAACCC-----------AUGGAAAUCCAGCAUGCGUUGG-----CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU ------.......(((((((.((((.-....)).........-----------.(((....))))).)).).)))-----)...........((((((((.....))))))))... ( -17.90) >DroSec_CAF1 41533 85 - 1 --------------CCACCCAGCGAA-CCACACACCCAACCC-----------AUGAAAACCCAGCAUGCGUUGG-----CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU --------------.......(((..-...)....(((((.(-----------(((.........)))).)))))-----.....)).....((((((((.....))))))))... ( -15.70) >DroSim_CAF1 44169 97 - 1 --CUAACUACCCAGCCACCCAGCGAA-CCACACACCCAACCC-----------AUGAAAACCCAGCAUGCGUUGG-----CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU --...........((......))...-........(((((.(-----------(((.........)))).)))))-----............((((((((.....))))))))... ( -16.50) >DroEre_CAF1 72348 93 - 1 --C----UACCCAGCCGCCCAUCGAA-ACAGCCACCCAACCC-----------AUGGAAGCCCAGCAUGCGUUGG-----CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU --.----...................-...(((..(((((.(-----------(((.........)))).)))))-----...).)).....((((((((.....))))))))... ( -17.50) >DroYak_CAF1 43168 96 - 1 --CAACUUACCCAGCCAGCCAUCGCA-ACU-CAACUCAACCC-----------AUGGAAACCCAGCAUGCGUUGG-----CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU --...........(((.((((.((((-...-...........-----------.(((....)))...)))).)))-----)..).)).....((((((((.....))))))))... ( -19.97) >DroAna_CAF1 56055 116 - 1 GCCAAACCACUCACCCACCCACCUAAGCCACCCACUCAAUGCCGUCGCCCUGUGUGUUAACCCAGCAUGCGUUGGCCUGGCCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU ..................................(((...((((..(((.((((((((.....))))))))..))).))))..)))......((((((((.....))))))))... ( -23.80) >consensus __C___CUACCCAGCCACCCAGCGAA_CCACCCACCCAACCC___________AUGGAAACCCAGCAUGCGUUGG_____CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU ..................................................................((((.((((.....)))).))))...((((((((.....))))))))... (-13.50 = -13.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:02 2006