Locus 3968

Sequence ID 2L_DroMel_CAF1
Location 11,584,850 – 11,584,954
Length 104
Max. P 0.726468
window6257

overview

Window 7

Location 11,584,850 – 11,584,954
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.22
Mean single sequence MFE -31.56
Consensus MFE -25.03
Energy contribution -25.91
Covariance contribution 0.88
Combinations/Pair 1.07
Mean z-score -1.64
Structure conservation index 0.79
SVM decision value 0.41
SVM RNA-class probability 0.726468
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11584850 104 - 22407834
GGUGUUUAUUUUAUUGUACAUUUGCUGCCGGCAAUUCCGCUGAGCCGUGAACUGUUCGGCGUGUCAUCAUUC------GCCUUGGCUUCAGUUGC----------UGAACAUCAUCAUCA
((((((((.......(((...(((..((((((.....((((((((.(....).))))))))((....))...------)))..)))..))).)))----------))))))))....... ( -28.91)
>DroSec_CAF1 39202 104 - 1
GGUGUUUAUUUUAUUGUACAUUUGCUGCCGGCAACUCCGCUGAGCCGUGAACUGUUCGGCGUGUCAUCAUUC------GCCUUGGCUUCAGUUGC----------UGAACAUCAUCAUCA
((((((.........(((....)))...((((((((.((((((((.(....).))))))))...........------((....))...))))))----------))))))))....... ( -30.70)
>DroEre_CAF1 69978 104 - 1
GGUGUUUAUUUUAUUGUACAUUUGCUGCCGGCAACUCCGCUGAGCCGUGAACUGUUCGGCGUGUCAUCAUUC------GCCUUGGCUUCAGUUGC----------UGAACAUCAUCAUCA
((((((.........(((....)))...((((((((.((((((((.(....).))))))))...........------((....))...))))))----------))))))))....... ( -30.70)
>DroYak_CAF1 40623 104 - 1
GGUGUUUAUUUUAUUGUACAUUUGCUGCCGGCAACUCCGCUGAGCCGUGAACUGUUCGGCGUGUCAUCAUUC------GCCUUGGCUUCAGUUGC----------CGAACAUCAUCAUCA
(((((((........(((....)))....(((((((.((((((((.(....).))))))))...........------((....))...))))))----------))))))))....... ( -32.90)
>DroAna_CAF1 51491 120 - 1
GGUGUUUAUUUUAUUGUACAUUUGCUGCCGGCAACUCCGCUCGGCCGUGAACUGUGUGGCGUGUCAUCAUCUCCUCCAGCUUCAGCUUCAGUUUCAGUUCCAGGACGAGAAUCACCACCA
((((.........(..((((((..(.((((((......)).)))).)..)).))))..).(((...((.((((((..((((..(((....)))..))))..)))).))))..))))))). ( -34.60)
>consensus
GGUGUUUAUUUUAUUGUACAUUUGCUGCCGGCAACUCCGCUGAGCCGUGAACUGUUCGGCGUGUCAUCAUUC______GCCUUGGCUUCAGUUGC__________UGAACAUCAUCAUCA
((((((((.............(((..((((((.....((((((((.(....).))))))))((....)).........)))..)))..)))..............))))))))....... (-25.03 = -25.91 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:01 2006