Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,583,868 – 11,583,967 |
Length | 99 |
Max. P | 0.657374 |
Location | 11,583,868 – 11,583,967 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.50 |
Mean single sequence MFE | -28.15 |
Consensus MFE | -21.59 |
Energy contribution | -20.95 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.60 |
Structure conservation index | 0.77 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11583868 99 + 22407834 UGGAAUCG----------------AGCAAAUGCCGAAGGCAGUGC-----CUUUUCAACGCUGACGGCGUGCAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAGGGCUUAUUAUGCACA ........----------------.......((((....(((((.-----........))))).))))(((((((((((....((.((((........)))).))..)))))).))))). ( -22.90) >DroPse_CAF1 40086 111 + 1 UGGAAACA-------CGGCGCCGGAGACUGUGCCGAAGGCAGUGG--UGCCUUUUCAACGCUGACGGCGUGUAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAAGGCUUAUUAUGCACA ((....))-------((((((.(....).))))))((((((....--))))))......((.....))(((((((((((....((.((((........)))).))..)))))).))))). ( -33.70) >DroSim_CAF1 40902 104 + 1 UGGAAUCG----------------AGGAAAUGCCGAAGGCAGUGCCUUGCCUUUUCAACGCUGACGGCGUGCAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAGGGCUUAUUAUGCACA (((((.((----------------(((...((((...))))...)))))...)))))..((.....))(((((((((((....((.((((........)))).))..)))))).))))). ( -27.20) >DroEre_CAF1 68989 99 + 1 UGGAAUCG----------------AGAAAAUGCCGAAGGCAAUGC-----CUGUUCAGCGCUGACGGCGUGCAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAGGGCUUAUUAUGCACA ........----------------.......((((.((((...))-----))..(((....)))))))(((((((((((....((.((((........)))).))..)))))).))))). ( -23.20) >DroAna_CAF1 50574 112 + 1 UGAAAAAGGUAAAAACA-------ACGCAGCGCCGAUGGCAAUGA-AGGCCUCUUCGUCGCUGACGGCGUGUAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAAGGCUUAUUAUGCACA .................-------..(((((((((.((((.((((-((....)))))).)))).))))))...((((((....((.((((........)))).))..)))))).)))... ( -28.20) >DroPer_CAF1 40033 111 + 1 UGGAAACA-------CGGCGCCGGAGACUGUGCCGAAGGCAGUGG--UGCCUUUUCAACGCUGACGGCGUGUAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAAGGCUUAUUAUGCACA ((....))-------((((((.(....).))))))((((((....--))))))......((.....))(((((((((((....((.((((........)))).))..)))))).))))). ( -33.70) >consensus UGGAAACG________________AGAAAAUGCCGAAGGCAGUGC__UGCCUUUUCAACGCUGACGGCGUGCAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAAGGCUUAUUAUGCACA ...............................((((..(((..((...........))..)))..))))(((((((((((....((.((((........)))).))..)))))).))))). (-21.59 = -20.95 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:00 2006