Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,581,859 – 11,581,953 |
Length | 94 |
Max. P | 0.818800 |
Location | 11,581,859 – 11,581,953 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 86.60 |
Mean single sequence MFE | -40.32 |
Consensus MFE | -34.48 |
Energy contribution | -35.04 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.68 |
Structure conservation index | 0.86 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11581859 94 + 22407834 A-GUGA-AAAACGAGGCACGAGGACGCUGCCGAGAGAGGAGGCCGAACUCCGCUUGGUUUCCACUUGGCGGAGGCGUCUGCCUGCCUGGAAAUCCG----------------- .-....-....(.(((((.(.(((((((.(((.(((.(((((((((.......))))))))).)))..))).))))))).).))))).).......----------------- ( -42.20) >DroSec_CAF1 36243 94 + 1 A-GUGA-AGAACGAGGCACGAGGACGCUGCCGAGAGAGAAGGCCGAACUCCGCCUGGUUUCCACUUGGCGGAGGCGUCUGCCUGCCUGGAAAUCCG----------------- .-....-....(.(((((.(.((((((.(((.........)))....(((((((.(((....))).))))))))))))).).))))).).......----------------- ( -40.10) >DroSim_CAF1 38518 113 + 1 ACGUGAAAGAACGAGGCACGAGGACGCUGCCGAGAGAGAAGGCCGUAAUCGUCCUGGUUUCCACUUGGCGGAGGAGUCUGCCUGCCUGGAAAUCCGUGGAGCCCCNNNNNNNN .(((......))).(((.(((..(((..(((.........))))))..)))((((((((((((...((((((....))))))....)))))).))).)))))).......... ( -38.60) >DroEre_CAF1 67007 93 + 1 A-GUGA-A-AACGAGGCACGAGGACGCUGCCGAGAGAGGAGGCCGAACUCCGCCUGCUUUUCACUUGGCGGAGGCGUCCGCCUGCCUGGAAAUCCG----------------- .-((..-.-.)).(((((.(.(((((((((((((((((.((((.(....).)))).))))...))))))...))))))).).)))))((....)).----------------- ( -43.20) >DroYak_CAF1 37637 93 + 1 A-GUGC-A-AACGAGGCACGAGGACGCUGCCGAGAGAGGAGGCCGAACGCCGCCUGGUUUUCACUUGGCGGAGGCGUCUGCCUGCCUGGAAAUCCG----------------- .-....-.-..(.(((((.(.(((((((.(((.(((.((((((((.........)))))))).)))..))).))))))).).))))).).......----------------- ( -37.50) >consensus A_GUGA_A_AACGAGGCACGAGGACGCUGCCGAGAGAGGAGGCCGAACUCCGCCUGGUUUCCACUUGGCGGAGGCGUCUGCCUGCCUGGAAAUCCG_________________ ...........(.(((((.(.(((((((.(((.(((.((((((((.........)))))))).)))..))).))))))).).))))).)........................ (-34.48 = -35.04 + 0.56)
Location | 11,581,859 – 11,581,953 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 86.60 |
Mean single sequence MFE | -37.58 |
Consensus MFE | -30.66 |
Energy contribution | -32.06 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.82 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11581859 94 - 22407834 -----------------CGGAUUUCCAGGCAGGCAGACGCCUCCGCCAAGUGGAAACCAAGCGGAGUUCGGCCUCCUCUCUCGGCAGCGUCCUCGUGCCUCGUUUU-UCAC-U -----------------.(((...(.(((((.(..(((((((((((...((....))...))))))....(((.........))).)))))..).))))).)...)-))..-. ( -35.40) >DroSec_CAF1 36243 94 - 1 -----------------CGGAUUUCCAGGCAGGCAGACGCCUCCGCCAAGUGGAAACCAGGCGGAGUUCGGCCUUCUCUCUCGGCAGCGUCCUCGUGCCUCGUUCU-UCAC-U -----------------.((....))(((((.(..((((((((((((..((....))..)))))))....(((.........))).)))))..).)))))......-....-. ( -38.80) >DroSim_CAF1 38518 113 - 1 NNNNNNNNGGGGCUCCACGGAUUUCCAGGCAGGCAGACUCCUCCGCCAAGUGGAAACCAGGACGAUUACGGCCUUCUCUCUCGGCAGCGUCCUCGUGCCUCGUUCUUUCACGU ........((((((((((((....)).(((.((.((....)))))))..))))).((.((((((......(((.........)))..)))))).)))))))............ ( -38.80) >DroEre_CAF1 67007 93 - 1 -----------------CGGAUUUCCAGGCAGGCGGACGCCUCCGCCAAGUGAAAAGCAGGCGGAGUUCGGCCUCCUCUCUCGGCAGCGUCCUCGUGCCUCGUU-U-UCAC-U -----------------.(((...(.(((((.(.(((((((((((((..((.....)).)))))))....(((.........))).)))))).).))))).)..-)-))..-. ( -40.60) >DroYak_CAF1 37637 93 - 1 -----------------CGGAUUUCCAGGCAGGCAGACGCCUCCGCCAAGUGAAAACCAGGCGGCGUUCGGCCUCCUCUCUCGGCAGCGUCCUCGUGCCUCGUU-U-GCAC-U -----------------.((....))(((((.(..((((((.(((((..((....))..))))).)....(((.........))).)))))..).)))))....-.-....-. ( -34.30) >consensus _________________CGGAUUUCCAGGCAGGCAGACGCCUCCGCCAAGUGGAAACCAGGCGGAGUUCGGCCUCCUCUCUCGGCAGCGUCCUCGUGCCUCGUU_U_UCAC_U ..................((....))(((((.(..((((((((((((..((....))..)))))))....(((.........))).)))))..).)))))............. (-30.66 = -32.06 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:59 2006