Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,575,120 – 11,575,238 |
Length | 118 |
Max. P | 0.500000 |
Location | 11,575,120 – 11,575,238 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.49 |
Mean single sequence MFE | -28.15 |
Consensus MFE | -19.58 |
Energy contribution | -19.75 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.10 |
Mean z-score | -2.06 |
Structure conservation index | 0.70 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11575120 118 + 22407834 ACUUAAUGAAAUUUCUGCUUAUGCAAAUUCGCUUGUUGUUGACACAUAAACAAGGCGAAGACAUCAAUAAUAAAGGCUAUUUGGCCGCAAAUAA--AGGCCAGAGAUGAAGUCAUUGAAC ..(((((((.((((((((((.(((...((((((..(((((........)))))))))))...............((((....))))))).....--))).)))))))....))))))).. ( -31.60) >DroPse_CAF1 31548 98 + 1 GCCUAAUGAAAUUUCUGCUUAUGCGAAUUCGUUUGUUGUUGACACAUAAACGAGACAAAGACAUCAAUAAUGGAG----------------------GGCCAGAGAUGAAGUCAUUGAAC ...((((((.((((((((((.......(((((((((((....)).))))))))).......(((.....)))..)----------------------)).)))))))....))))))... ( -20.60) >DroEre_CAF1 60199 118 + 1 ACUUAAUGAAAUUUCUGCUUAUGCGAAUUCGCUUGUUGUUGACACAUAAACAAGGCGAAAACAUCAAUAAUAAAGGCUAUUUGGCCGCAAAUAG--AGGCCAGAGAUGAAGUCAUUGAAC ..(((((((.((((((((((.(((...((((((..(((((........)))))))))))...............((((....))))))).....--))).)))))))....))))))).. ( -32.70) >DroYak_CAF1 30751 118 + 1 ACUUAAUGAAAUUUCUGCUUAUGCGAAUUCGCUUGUUGUUGACACAUAAACAAGUCGAAGACAUCAAUAAUAAAGGCUAUUUGGGCGCAAAUAG--AGGCCAGAGAUGAAGUCAUUGAAC ..(((((((.((((((((((..(((....))).((((.(((((..........))))).)))).............(((((((....)))))))--))).)))))))....))))))).. ( -29.70) >DroAna_CAF1 41510 120 + 1 ACUUAAUGAAAUUUCUGCUUAUGCGAAUUCGCUUGUUGUUGACACAUAAACAAGCCGGGGACAUCAAUAAUAAGGGCCAUUUGGCCGCAAAUAGAGAGGCCAGAGAUGAAGUCAUUGAAC ..(((((((.((((((((((.(((.......(((((((((((..(........)..(....).)))))))))))((((....))))))).......))).)))))))....))))))).. ( -33.70) >DroPer_CAF1 31380 98 + 1 GCCUAAUGAAAUUUCUGCUUAUGCGAAUUCGUUUGUUGUUGACACAUAAACGAGACAAAGACAUCAAUAAUGGAG----------------------GGCCAGAGAUGAAGUCAUUGAAC ...((((((.((((((((((.......(((((((((((....)).))))))))).......(((.....)))..)----------------------)).)))))))....))))))... ( -20.60) >consensus ACUUAAUGAAAUUUCUGCUUAUGCGAAUUCGCUUGUUGUUGACACAUAAACAAGACGAAGACAUCAAUAAUAAAGGCUAUUUGGCCGCAAAUAG__AGGCCAGAGAUGAAGUCAUUGAAC ..(((((((.((((((((((..(((....)))((((((((((.....................)))))))))).......................))).)))))))....))))))).. (-19.58 = -19.75 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:54 2006