Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,569,696 – 11,569,808 |
Length | 112 |
Max. P | 0.614014 |
Location | 11,569,696 – 11,569,808 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.52 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -25.54 |
Energy contribution | -24.93 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.11 |
Mean z-score | -1.44 |
Structure conservation index | 0.87 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11569696 112 + 22407834 --------GAGCAUAAAUUUGCAAAGUGCCGGGCCUCGGUUAGUGCAUAACUUUUGUGGCAUGCCAAAAGCCACAAAACAGCAAAGGCAUUGCCGUCAUGAAUAAAGCACUCAGAUUCAC --------..((.....(((((...(((((..((....))..).))))...(((((((((.........)))))))))..)))))(((...)))............))............ ( -28.40) >DroPse_CAF1 25942 119 + 1 CGAAAGCCGAGCAUAAAUUUGCAAAGUGCCGAGCAUCGGUUAGUGCAUAACUUUUGUGGCAUGCCAAAAGCCACA-AACAGCAAAGGCAUUGCCAUCAUGAAUAACGCACUCGCACUCGC (((.(((((((((......)))....(((...)))))))))(((((........(((((((((((....((....-....))...)))).))))).))........))))).....))). ( -32.09) >DroSim_CAF1 24132 112 + 1 --------GAGCAUAAAUUUGCAAAGUGCCGGGCCUCGGUUAGUGCAUAACUUCUGUGGCAUGCCAAAAGCCACAAAACAGCAAAGGCAUUGCCAUCAUGAAUAAAGCACUCAGAUUCAC --------..(((......))).....((((.....)))).(((((.....((((((((((((((....((.........))...)))).))))).)).)))....)))))......... ( -27.10) >DroEre_CAF1 54793 112 + 1 --------GAGCAUAAAUUUGCAAAGUGCCGUGCCUUGGUUAGUGCAUAACUUCUGUGGCAUGCCAAAAGCCACAAAACAGCAAAGGCAUUGCCGUCAUGAAUAAAGCACUCAGAUUCAC --------..(((......)))..(((((.((((((.....)).))))...((((((((((((((....((.........))...)))).))))).)).)))....)))))......... ( -27.60) >DroAna_CAF1 36421 112 + 1 --------GAGCAUAAAUUUGCAAAGUGCCGAGCAUCGGUUAGUGCAUAACUUUUGUGGCAUGCCAAAAGCCACAAAACAGCAAAGGCAUUGCCGUCAUGAAUAACCUACUCACAUUCAC --------..(((......)))..((((..(((....(((((...(((.(((((((((((.........))))))))).......(((...))))).)))..)))))..))).))))... ( -28.30) >DroPer_CAF1 26113 119 + 1 CGAAAGCCGAGCAUAAAUUUGCAAAGUGCCGAGCAUCGGUUAGUGCAUAACUUUUGUGGCAUGCCAAAAGCCACA-AACAGCAAAGGCAUUGCCAUCAUGAAUAACGCACUCGCACUCGC (((.(((((((((......)))....(((...)))))))))(((((........(((((((((((....((....-....))...)))).))))).))........))))).....))). ( -32.09) >consensus ________GAGCAUAAAUUUGCAAAGUGCCGAGCAUCGGUUAGUGCAUAACUUUUGUGGCAUGCCAAAAGCCACAAAACAGCAAAGGCAUUGCCAUCAUGAAUAAAGCACUCACAUUCAC ........(((........((((....((((.....))))...))))....((((((((((((((....((.........))...)))).))))).)).))).......)))........ (-25.54 = -24.93 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:51 2006