Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,214,175 – 1,214,278 |
Length | 103 |
Max. P | 0.726899 |
Location | 1,214,175 – 1,214,278 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 93.91 |
Mean single sequence MFE | -37.12 |
Consensus MFE | -34.45 |
Energy contribution | -34.74 |
Covariance contribution | 0.29 |
Combinations/Pair | 1.03 |
Mean z-score | -1.18 |
Structure conservation index | 0.93 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726899 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1214175 103 + 22407834 ACCCGCCGAGUCUUUAAGUGGCUCGAAUGGCUUCCAUUGCCUCGCAGCUCGGCUGGACGCCCUCAUUUGGGAUCCGGACUCAGGACUCCGGAUUGCAUGAGAC- .((.((((((.((....(.(((...(((((...)))))))).)..)))))))).)).....((((..((.((((((((........)))))))).))))))..- ( -40.30) >DroSec_CAF1 9841 103 + 1 ACCCGCCGAGUCUUUAAGUGGCUCGAAUGGCUUCCAUAGCCUCGCAGCUCCGCUGGACGCCCUCAUUUGGGAUCCGGACUCAGGACUCCGGAUUGCAUGAGAC- ......((((((.......))))))...(((.((((.(((......)))....)))).)))((((..((.((((((((........)))))))).))))))..- ( -37.10) >DroSim_CAF1 9896 103 + 1 ACCCGCCGAGUCUUUAAGUGGCUCGAAUGGCUUCCAUAGCCUCGCAGCUCCGCUGGACGCCCUCAUUUGGGAUCCGGACUCAGGACUCCGGAUUGCAUGAGAC- ......((((((.......))))))...(((.((((.(((......)))....)))).)))((((..((.((((((((........)))))))).))))))..- ( -37.10) >DroEre_CAF1 9340 95 + 1 ACCCGCCGAGUCUUUAAGUGCCUCGAAUGGCUUCCAUAG--------CUCCGCUGGACGCCCUCAUUUGGGAUCCGGACUGAGGACUCCGGAUUGCAUGAGAC- .((.((.(((.((......(((......)))......))--------))).)).)).....((((..((.((((((((........)))))))).))))))..- ( -33.10) >DroYak_CAF1 10155 104 + 1 ACCCGCCGAGUCUUUAAGUGGCUCGAAUGGCUUCCAUAGCCUCGCUGCUCCGCUGGACGCCCUCAUUUGGGAUCCGGACUCGGGACUCCGGAUUGCAUGGGACU .(((((((((((.......))))))...((((.....))))..))((((((.(((((..(((......))).)))))....((....)))))..))).)))... ( -38.00) >consensus ACCCGCCGAGUCUUUAAGUGGCUCGAAUGGCUUCCAUAGCCUCGCAGCUCCGCUGGACGCCCUCAUUUGGGAUCCGGACUCAGGACUCCGGAUUGCAUGAGAC_ ......((((((.......))))))...(((.((((.(((......)))....)))).)))((((..((.((((((((........)))))))).))))))... (-34.45 = -34.74 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:56 2006