Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,560,374 – 11,560,479 |
Length | 105 |
Max. P | 0.987992 |
Location | 11,560,374 – 11,560,479 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 67.40 |
Mean single sequence MFE | -22.27 |
Consensus MFE | -11.77 |
Energy contribution | -11.40 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.29 |
Mean z-score | -2.13 |
Structure conservation index | 0.53 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.987992 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11560374 105 - 22407834 AAAAAUGCAAUGAAUGUUGCUGGCCGUAAAGGAG-AUGGCAGAAUAUUGAGAGCCUUCGAGGCUGCAAA-AG------------GUG-GGGUGGAAAAAAAAAUUGCAAAUGGAUACAUG .....((((((..((.(..((.(((((.......-)))))......(((..((((.....)))).))).-.)------------)..-).))..........)))))).(((....))). ( -22.30) >DroSec_CAF1 20005 107 - 1 AAAAAUGCAAUGAAUGUUGCUGGCCGUAAAGAAG-AUGGCAGAAUAUUGAGAGCCUUCGAGGCUGCAAAAAG------------GUGGGGGUGGAAAAAAAAAUUGAAAAUGGAUACAGG .....(((..(.((((((.(((.((((.......-))))))))))))).).((((.....))))))).....------------.................................... ( -18.20) >DroEre_CAF1 50380 93 - 1 AAAAAUGCAAUGAAUGUUGUUGGCCGUGCAGAAG-AUGGCAGAAUAUUGACGGCCAUCGAGGCU----------------------G-GGCUGGA---AAAUAUGGAAAAUGUAUACAGG ....(((((....(((((.(..(((..((....(-(((((.(........).))))))...)).----------------------.-)))..).---.)))))......)))))..... ( -23.90) >DroAna_CAF1 31905 117 - 1 AAAAUUUCAAUGUACGUGGUUGCUCGUAAAGGAGAAUGGGUGAGUAUUGAGAGCCAUUCAGGCUC-AAAAGGAUAUAUGAAAGGGCACGGGCAAGGCAGAGGAAUAAAAAUAAAG--AAA ...(((((..(((......((((((((......((((((.(..........).))))))..((((-................)))))))))))).)))..)))))..........--... ( -24.69) >consensus AAAAAUGCAAUGAAUGUUGCUGGCCGUAAAGAAG_AUGGCAGAAUAUUGAGAGCCAUCGAGGCUG_AAA_AG____________GUG_GGGUGGAAAAAAAAAUUGAAAAUGGAUACAGG ......(((((....)))))..(((((........)))))...........((((.....))))........................................................ (-11.77 = -11.40 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:47 2006