Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,557,361 – 11,557,459 |
Length | 98 |
Max. P | 0.860793 |
Location | 11,557,361 – 11,557,459 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -31.78 |
Consensus MFE | -25.12 |
Energy contribution | -25.82 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.22 |
Mean z-score | -2.47 |
Structure conservation index | 0.79 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860793 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11557361 98 + 22407834 UUCGUUUGCCCGGCUUUGUUCAGCUGGGCAAAGCUUAAACUUUGGUACUUGUCCUGCGCAUAAGUCAAACACGUGCCAGGAAGAAGUUUUCAAGUUUU ....(((((((((((......)))))))))))....((((((..(.((((.(((((.((((..(.....)..)))))))))..)))).)..)))))). ( -35.70) >DroPse_CAF1 18342 95 + 1 ACUGUUUGUGGAGCCUGG---UGUUGGGCAAAGUUUAAACUUUGCUGCUUGUCCUGGGCAUAAGUCAAACACGUGCCAGGAGCAAGUUGCCAAGUCCU .........(((.(.(((---(....((((((((....))))))))(((((((((((.(((..(.....)..))))))))).))))).)))).)))). ( -33.30) >DroSec_CAF1 16941 98 + 1 UUCGGUUGCCCGGCUUUGUUCAGCUGGGCAAAGUUUAAACUUUGGUACUUGUCCUGCGCAUAAGUCAAACACGUGCCAGGAAGAAGUUUUCAAGUUUU .....((((((((((......)))))))))).....((((((..(.((((.(((((.((((..(.....)..)))))))))..)))).)..)))))). ( -34.80) >DroSim_CAF1 16905 98 + 1 UUCGUUUGCCCGGCUUUGUUCAGCUGGGCAAAGUUUAAACUUUGGUACUUGCCCUGCGCAUAAGUCAAACACGUGCCAGGAAGAAGUUUUCAAGUUUU ....(((((((((((......)))))))))))....((((((..(.((((..((((.((((..(.....)..))))))))...)))).)..)))))). ( -32.60) >DroAna_CAF1 28978 98 + 1 UUUGUUUGUUCAGCUCACUUUAGUUGGGAAAAGUUUAAACUUUGGUACUUGUCCUGCGCAUAAGUCAAACACGUGCCCGGAAGAAGUUGCCAACUUUU ........(((((((......)))))))(((((((..(((((.(((((.(((...((......))...))).)))))(....))))))...))))))) ( -21.00) >DroPer_CAF1 18318 95 + 1 ACUGUUUGUGGAGCCUGG---UGUUGGGCAAAGUUUAAACUUUGCUGCUUGUCCUGGGCAUAAGUCAAACACGUGCCAGGAGCAAGUUGCCAAGUCCU .........(((.(.(((---(....((((((((....))))))))(((((((((((.(((..(.....)..))))))))).))))).)))).)))). ( -33.30) >consensus UUCGUUUGCCCAGCUUUGUUCAGCUGGGCAAAGUUUAAACUUUGGUACUUGUCCUGCGCAUAAGUCAAACACGUGCCAGGAAGAAGUUGCCAAGUUUU ....((((((((((........))))))))))....((((((.((.((((.(((((.((((..(.....)..)))))))))..)))).)).)))))). (-25.12 = -25.82 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:46 2006