Locus 3957

Sequence ID 2L_DroMel_CAF1
Location 11,552,548 – 11,552,639
Length 91
Max. P 0.878702
window6241

overview

Window 1

Location 11,552,548 – 11,552,639
Length 91
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 93.56
Mean single sequence MFE -25.22
Consensus MFE -23.72
Energy contribution -23.24
Covariance contribution -0.48
Combinations/Pair 1.08
Mean z-score -1.29
Structure conservation index 0.94
SVM decision value 0.90
SVM RNA-class probability 0.878702
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11552548 91 + 22407834
ACUUUUUGUGUUGCCACAUUUAUUUGGGGGUCAACCUUCUUCAUUUCAUUUGACCCGAAGUCCGCUUAAGUGGCUCAAAAAGUAAAGG---GGC----
((((((((....(((((..........(((((((...............))))))).(((....)))..))))).)))))))).....---...---- ( -25.96)
>DroSec_CAF1 12163 95 + 1
ACUUUUUGUGUUGCCACAUUUAUUUGGGGGUCAACCUUCUUCAUUUCAUUUGACCCGAAGUCCGCUUAAGUGGCUCAAAAAGUAAAGG---GGCCAGC
((((((((....(((((..........(((((((...............))))))).(((....)))..))))).)))))))).....---....... ( -25.96)
>DroSim_CAF1 12127 95 + 1
ACUUUUUGUGUUGCCACAUUUAUUUGGGGGUCAACCUUCUUCAUUUCAUUUGACCCGAAGUCCGCUUAAGUGGCUCAAAAAGUAAAGG---GGCCAGC
((((((((....(((((..........(((((((...............))))))).(((....)))..))))).)))))))).....---....... ( -25.96)
>DroEre_CAF1 42558 95 + 1
GCUUUUUGUGUUGCCACAUUUAUUUGGGGGCAAACCUUCUUCAUUUCAUUUGACCCAAAGUCCGCUUAAGUGGCUCAAAAAGUAAAGG---GACCAGC
((((((((....(((((.......((((((....))....(((.......)))))))(((....)))..))))).)))))))).....---....... ( -23.30)
>DroYak_CAF1 12659 98 + 1
GCUUUUUGUGUUGCCACAUUUAUUUGGGGGCAAACCUUCUUCAUUUCAUUUGACCCAAAGUCCGCUUAAGUGGCUCAAAAAGUAAAGGGGGGGCCGGU
(((.......(((((.((......))..))))).(((((((.((((..(((((.((((((....)))...))).))))))))).)))))))))).... ( -24.90)
>consensus
ACUUUUUGUGUUGCCACAUUUAUUUGGGGGUCAACCUUCUUCAUUUCAUUUGACCCGAAGUCCGCUUAAGUGGCUCAAAAAGUAAAGG___GGCCAGC
((((((((....(((((.......((((((....))....(((.......)))))))(((....)))..))))).))))))))............... (-23.72 = -23.24 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:45 2006