Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,524,837 – 11,524,929 |
Length | 92 |
Max. P | 0.577693 |
Location | 11,524,837 – 11,524,929 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -34.18 |
Consensus MFE | -19.58 |
Energy contribution | -20.42 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.20 |
Mean z-score | -2.20 |
Structure conservation index | 0.57 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11524837 92 - 22407834 AGCCGGAGCCACCUACCACCCAGCCGGGCAAAUUCCAGCCGGAGCCUCAUACCAUCCGGCAGGUCAAUUGCCGGCUGGUGCUUCAUACCACC ....(((((..........((((((((.(((...((.((((((...........)))))).))....))))))))))).)))))........ ( -36.00) >DroSec_CAF1 6546 92 - 1 AGCCGGAGCCACCUACCACCCAGCCGGGCAAAUUCCAGCCGGAGCCUCAUACCAUCCGGCAGGUCAUUUGCCGGCUGGAGCUUCAUACCAUC ....(((((..........((((((((.(((((.((.((((((...........)))))).))..))))))))))))).)))))........ ( -38.20) >DroSim_CAF1 6189 92 - 1 AGCUGGAGCCACCUACCACCCAGCCGGGCAAAUUCCAGCCGGAGCCUCAUACCAUCCGGCAGGUCAUUUGCCGGCUGGAGCUUCAUACCAUC ((((((((....)).))..((((((((.(((((.((.((((((...........)))))).))..))))))))))))))))).......... ( -38.90) >DroEre_CAF1 5993 92 - 1 AGCCGGAGCCACGUACCACCCAGCGGGGCAAGUUCCAGCCGGAGCAUCCUACCAUCCUGCGGGUCACUUGCCGGCGGGAGCUUCGUACCACC (((.((((((.(((........))).)))..(((((....))))).))).....((((((.(((.....))).))))))))).......... ( -34.10) >DroYak_CAF1 6494 92 - 1 AGCCGGAGCCACCUAUCACCCAACGGGUCAAUUGCCAGCGGGAGCUUCGUACCACCCAGCGGGUCAAGUGCCCCACGGAGCCAGCUACUAUC (((.((..((.......((((...((((....(((.(((....)))..)))..))))...))))...(((...)))))..)).)))...... ( -26.60) >DroAna_CAF1 2485 92 - 1 AGCCGGAGCCACCUACCAUCCGGCUGGACAAAUUCCCCCAGGCGCCACCUAUCACCCGGCUGGUCAUCUGCCGGCAGGGGCCACCUACCAUC (((((((...........)))))))(((.....)))...(((.(((.(((.....(((((.........))))).))))))..)))...... ( -31.30) >consensus AGCCGGAGCCACCUACCACCCAGCCGGGCAAAUUCCAGCCGGAGCCUCAUACCAUCCGGCAGGUCAUUUGCCGGCUGGAGCUUCAUACCAUC .((.((((....)).))..((.(((((.(((((.((.((.(((...........))).)).))..)))))))))).)).))........... (-19.58 = -20.42 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:42 2006