Locus 3953

Sequence ID 2L_DroMel_CAF1
Location 11,521,236 – 11,521,331
Length 95
Max. P 0.886682
window6233

overview

Window 3

Location 11,521,236 – 11,521,331
Length 95
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.58
Mean single sequence MFE -19.70
Consensus MFE -8.92
Energy contribution -8.32
Covariance contribution -0.60
Combinations/Pair 1.29
Mean z-score -1.95
Structure conservation index 0.45
SVM decision value 0.94
SVM RNA-class probability 0.886682
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11521236 95 - 22407834
CA-------------AUUUGUUCAUCGACAAGUUGUCAGUAGCAAAUUGGGAACGUUCU-GCCU-----------GUCAAUCAAUUACAUUUGUAAAAUGAACAAAAAACCAGAAUACAA
..-------------.(((((((((..((((((((.(((..(((...((....))...)-))))-----------).)))).........))))...))))))))).............. ( -19.00)
>DroSec_CAF1 2241 107 - 1
CAAACCCUAG-GUAAAUUUGUUCAUCGACAAGUUGUCAGUUGCAAACUGGGAAAAUUCU-GCCU-----------AUAAAUCAAUUGAAUUUGUAAAAUGAACAAAAAAACAGAAUACAA
...(((...)-))...(((((((((..((((((..(((((((.....((((........-.)))-----------).....)))))))))))))...))))))))).............. ( -21.90)
>DroSim_CAF1 2078 107 - 1
CAAACCCUAG-GUAAAUUUGUUCAUCGACAAGUUGUCAGUUGCAAACUGGGAAAAUUCU-GCCU-----------AUUAAUCAAUUGAAUUUGUAAAAUGAACAAAAAAACAGAAUACAA
...(((...)-))...(((((((((..((((((..(((((((.....((((........-.)))-----------).....)))))))))))))...))))))))).............. ( -21.90)
>DroEre_CAF1 2257 116 - 1
CAAACCCUAAACUAAAUUUGUUCCACAUCAAGUUGGCAGCAGCUAAAUUGGAACAAUUUUAGAUACAA----UAGAGCAACCAAUUGAAUUUGUGAAAUGGACAAGAAAUCAAACUACCA
.....((....(((((.((((((((.((..(((((....)))))..)))))))))).))))).(((((----.....(((....)))...)))))....))................... ( -21.90)
>DroYak_CAF1 2316 120 - 1
CAAACCCUAAACUCAAUUUGUUCAACGUCAAGUUGACAGCAGCAAAAUUGGAACAUUAUUAUAGAUAAUAGAUAGAUAAAACAAUUGAAUUUGAGAGAUGGACAAGAAUACAAACUACAA
................((((((((.(.((((((((....))))..(((((.....(((((..........)))))......)))))....))))..).)))))))).............. ( -13.80)
>consensus
CAAACCCUAA_CUAAAUUUGUUCAUCGACAAGUUGUCAGUAGCAAAAUGGGAACAUUCU_GCCU___________AUAAAUCAAUUGAAUUUGUAAAAUGAACAAAAAAACAGAAUACAA
................((((((((..(((.....)))............................................(((......))).....)))))))).............. ( -8.92 =  -8.32 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:37 2006