Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,519,828 – 11,519,922 |
Length | 94 |
Max. P | 0.961888 |
Location | 11,519,828 – 11,519,922 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 71.89 |
Mean single sequence MFE | -16.92 |
Consensus MFE | -5.65 |
Energy contribution | -6.17 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.16 |
Mean z-score | -2.14 |
Structure conservation index | 0.33 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11519828 94 + 22407834 AGCGAUGAAAUAACCCAGAUAAGUCAAAUCAGACGUGUCAAAAUUGAACAAUAAAAAUUAAAGUUUUUA-AUUUAUUGG--GGCAUUUCAAAAUUCU .....((((((..((((((((.(((......))).))))............(((((((....)))))))-......)))--)..))))))....... ( -20.70) >DroSec_CAF1 832 79 + 1 AGCGAAGAAAUAACCCAGAUAAGUCAAAUCAGACGUGUCAAAAUUGAACAAUA-----------------AUUUAUUGG-CGGCAUUUCAAAAUUUU ......(((((..((((((((.(((......))).)))).((((((.....))-----------------))))..)))-.)..)))))........ ( -13.70) >DroSim_CAF1 668 80 + 1 AGCGAAGAAAUAACCCAGAUAAGUCAAAUCAGACGUGUCAAAAUUGAACAAUA-----------------AUUUAUUGGGGGGCAUUUCAAAAUUUU ......(((((..(((.((((.(((......))).)))).........(((((-----------------...))))).)))..)))))........ ( -18.10) >DroEre_CAF1 791 94 + 1 AGAAGGGAAAAAUCCCAGAUAAAUCAAAUUAGAUGUGUCAAAAUUGUACAAAA--AAUUACAAGUUUUAAACCUUUUGG-GGGUAUUUCCAAUUUUU .....(((((.(((((.((((.(((......))).))))....(((((.....--...)))))...............)-)))).)))))....... ( -20.40) >DroYak_CAF1 869 88 + 1 A----AGAAAAAUCCCAGCUGAAUCAAAUCAGAUGUGUCAAAAUUUUACACAA--AAUUACAAGUUUUA-GCUUAUUGG-GCGUAUUUAU-UUAUUU .----........(((((((((......)))).(((((.........))))).--......((((....-)))).))))-).........-...... ( -11.70) >consensus AGCGAAGAAAUAACCCAGAUAAGUCAAAUCAGACGUGUCAAAAUUGAACAAUA__AAUUA_A__UUUUA_AUUUAUUGG_GGGCAUUUCAAAAUUUU ......((((...(((.((((.(((......))).)))).........(((((....................)))))..)))..))))........ ( -5.65 = -6.17 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:35 2006