Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,519,472 – 11,519,592 |
Length | 120 |
Max. P | 0.868449 |
Location | 11,519,472 – 11,519,592 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -31.38 |
Consensus MFE | -27.44 |
Energy contribution | -26.00 |
Covariance contribution | -1.44 |
Combinations/Pair | 1.21 |
Mean z-score | -1.45 |
Structure conservation index | 0.87 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11519472 120 - 22407834 GGUCCGAUCAAAAUCGGCCAACAACUUGGGAUAGCACAUAAUGCCACCCUCACGACGGACUUCUUUGAUCUGGUCAAGAAGUUUAUUGUGUGUUAGAUUACAAUUAUAUACUUCAUCGCG ((.(((((....)))))))((((....(((...(((.....)))..))).(((((..((((((((.(((...)))))))))))..))))))))).......................... ( -31.30) >DroSec_CAF1 472 120 - 1 GGUCCGAUCAAAAUCGGCCAACAACUUGGGAUAGCACAUAAUGCCACCCUCACGACGGACUUCUUUGAUCUGGUCAAGAAGUUUAUUGUGUGUCAGAUUACAAUUAUAUACUUCAUCGCG ((.(((((....))))))).(((....(((...(((.....)))..))).(((((..((((((((.(((...)))))))))))..))))))))........................... ( -29.80) >DroSim_CAF1 329 120 - 1 GGUCCGAUCAAAAUCGGCCAACAACUUGGGAUAGCACAUAAUGCCACCCUCACGACGGACUUCUUUGAUCUGGUCAAGAAGUUUAUUGUGUGUCAGAUUACAAUUAUAUACUUCAUCGCG ((.(((((....))))))).(((....(((...(((.....)))..))).(((((..((((((((.(((...)))))))))))..))))))))........................... ( -29.80) >DroEre_CAF1 435 120 - 1 GGUUCGAUCGAAAUCGGCCAACAACUUGGGAUAGCACAUAAUGCCACCCUUAUGGCGAACUUCUUUGAUCUGGUCAAGAAGUUUGUUAUGCGUCAGAUUGCAACUAUAUAAUUCAUCGCG (((.((((....)))))))........(((...(((.....)))..)))..((((((((((((((.(((...)))))))))))))))))(((...(((((........)))))...))). ( -31.10) >DroYak_CAF1 499 120 - 1 GGUUCGAUCAAAAUCGGCCAACAACUUGGGGUAGCACAUAAUGCCACCUUUACGGCGAACUUCUUUGAUCUGGUCAAGAAGUUUGUUGUGUAUCAGAUUACAGGUAUAUACUUUAUCUCG (((.((((....)))))))....(((((((((.(((.....))).)))).(((((((((((((((.(((...))))))))))))))))))..........)))))............... ( -34.90) >consensus GGUCCGAUCAAAAUCGGCCAACAACUUGGGAUAGCACAUAAUGCCACCCUCACGACGGACUUCUUUGAUCUGGUCAAGAAGUUUAUUGUGUGUCAGAUUACAAUUAUAUACUUCAUCGCG ((.(((((....)))))))........(((...(((.....)))..))).(((((..((((((((.(((...)))))))))))..))))).............................. (-27.44 = -26.00 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:34 2006