Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,213,515 – 1,213,609 |
Length | 94 |
Max. P | 0.914078 |
Location | 1,213,515 – 1,213,609 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.56 |
Mean single sequence MFE | -35.93 |
Consensus MFE | -16.29 |
Energy contribution | -15.93 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.26 |
Mean z-score | -2.39 |
Structure conservation index | 0.45 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.914078 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1213515 94 + 22407834 GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA-------GGCGGGA----------AUAAGUAGCUAAAGUGGUUGCCCCUUCC--ACUUG---GAAGUGG-G (((((---(((((......(..((..((((((((.....))))))))..-------..))..)----------.....))))))...))))..((((((((--....)---)))).))-) ( -33.50) >DroPse_CAF1 12620 112 + 1 GCAGUUGGGGCGAAAAAAGUUUCGUGUUGCGUUUUUCGAGAGUGCAGAAGGCAGAAGGCAGGAGGCAGGAGACAUAAGUAGCCAAAGUGGUGGCCCCCUGCUUA-------CUACUCA-A (((..((..((.......))..))...))).........((((((.....))((.(((((((.(((.(....).......(((.....))).))).))))))).-------)))))).-. ( -36.00) >DroSim_CAF1 9225 94 + 1 GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA-------GGCGGGA----------AUAAGUAGCUAAAGUGGUUGCCCCUUCC--ACUGG---GAAGUGG-G (((((---(((((......(..((..((((((((.....))))))))..-------..))..)----------.....))))))...))))..((((((((--....)---)))).))-) ( -33.10) >DroEre_CAF1 8716 94 + 1 GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA-------GGCGGGC----------AUAAGCAGCCAAAGUGGCUGCCCCUUCC--AUUCG---GAAGUGG-G ((((.---.(((..((....))..)))..)((((((.(......).)))-------))).)))----------....((((((.....))))))(((((((--....)---)))).))-. ( -35.90) >DroYak_CAF1 9489 95 + 1 GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUCGAAAGUGCAGAA-------GGCGGGA----------AUAAGUAGCCAAAGUGGCUGCCCCUUCC--ACUCG---GAUGUGGGG (((((---(((((......(..((..((((((((.....))))))))..-------..))..)----------.....))))))...))))..((((.(((--....)---))...)))) ( -36.80) >DroPer_CAF1 12468 112 + 1 GCAGUUGGGGCGAAAAAAGUUUCGUGUUGCGUUUUUGGAGAGUGCAGAA-------GGCAGGAGGCAGGAGACAUAAGUAGCCAAAGUGGUGGCCCCCUGCUCACUGCUCACUGCUCA-A (((..((..((.......))..))...))).......((((((((((..-------((((((.(((.(....).......(((.....))).))).))))))..))))..))).))).-. ( -40.30) >consensus GCCGU___GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA_______GGCGGGA__________AUAAGUAGCCAAAGUGGUUGCCCCUUCC__ACUCG___GAAGUGG_G (((((....))...............((((((((.....)))))))).........)))..................((((((.....)))))).......................... (-16.29 = -15.93 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:55 2006