Locus 395

Sequence ID 2L_DroMel_CAF1
Location 1,213,515 – 1,213,609
Length 94
Max. P 0.914078
window628

overview

Window 8

Location 1,213,515 – 1,213,609
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.56
Mean single sequence MFE -35.93
Consensus MFE -16.29
Energy contribution -15.93
Covariance contribution -0.36
Combinations/Pair 1.26
Mean z-score -2.39
Structure conservation index 0.45
SVM decision value 1.09
SVM RNA-class probability 0.914078
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1213515 94 + 22407834
GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA-------GGCGGGA----------AUAAGUAGCUAAAGUGGUUGCCCCUUCC--ACUUG---GAAGUGG-G
(((((---(((((......(..((..((((((((.....))))))))..-------..))..)----------.....))))))...))))..((((((((--....)---)))).))-) ( -33.50)
>DroPse_CAF1 12620 112 + 1
GCAGUUGGGGCGAAAAAAGUUUCGUGUUGCGUUUUUCGAGAGUGCAGAAGGCAGAAGGCAGGAGGCAGGAGACAUAAGUAGCCAAAGUGGUGGCCCCCUGCUUA-------CUACUCA-A
(((..((..((.......))..))...))).........((((((.....))((.(((((((.(((.(....).......(((.....))).))).))))))).-------)))))).-. ( -36.00)
>DroSim_CAF1 9225 94 + 1
GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA-------GGCGGGA----------AUAAGUAGCUAAAGUGGUUGCCCCUUCC--ACUGG---GAAGUGG-G
(((((---(((((......(..((..((((((((.....))))))))..-------..))..)----------.....))))))...))))..((((((((--....)---)))).))-) ( -33.10)
>DroEre_CAF1 8716 94 + 1
GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA-------GGCGGGC----------AUAAGCAGCCAAAGUGGCUGCCCCUUCC--AUUCG---GAAGUGG-G
((((.---.(((..((....))..)))..)((((((.(......).)))-------))).)))----------....((((((.....))))))(((((((--....)---)))).))-. ( -35.90)
>DroYak_CAF1 9489 95 + 1
GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUCGAAAGUGCAGAA-------GGCGGGA----------AUAAGUAGCCAAAGUGGCUGCCCCUUCC--ACUCG---GAUGUGGGG
(((((---(((((......(..((..((((((((.....))))))))..-------..))..)----------.....))))))...))))..((((.(((--....)---))...)))) ( -36.80)
>DroPer_CAF1 12468 112 + 1
GCAGUUGGGGCGAAAAAAGUUUCGUGUUGCGUUUUUGGAGAGUGCAGAA-------GGCAGGAGGCAGGAGACAUAAGUAGCCAAAGUGGUGGCCCCCUGCUCACUGCUCACUGCUCA-A
(((..((..((.......))..))...))).......((((((((((..-------((((((.(((.(....).......(((.....))).))).))))))..))))..))).))).-. ( -40.30)
>consensus
GCCGU___GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA_______GGCGGGA__________AUAAGUAGCCAAAGUGGUUGCCCCUUCC__ACUCG___GAAGUGG_G
(((((....))...............((((((((.....)))))))).........)))..................((((((.....)))))).......................... (-16.29 = -15.93 +  -0.36) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:55 2006